inst/testScripts/complete/dataSets/GSE19539/21.doASCRMAv2.R

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

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# Allele-specific CRMAv2
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future::plan("multisession")
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)


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# Setup
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dataSet <- "GSE19539"
chipType <- "GenomeWideSNP_6,Full"

csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)
print(csR)


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# AS-CRMAv2
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dsNList <- doASCRMAv2(csR, verbose=verbose)
print(dsNList)

dsN <- exportAromaUnitPscnBinarySet(dsNList)
print(dsN)