inst/testScripts/complete/dataSets/GSE20584/21.doASCRMAv2.R

##########################################################################
# Allele-specific CRMAv2
##########################################################################
future::plan("multisession")
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)


# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Setup
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
dataSet <- "GSE20584"
chipType <- "GenomeWideSNP_6,Full"

csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)
print(csR)


# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# AS-CRMAv2
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
dsNList <- doASCRMAv2(csR, verbose=verbose)
print(dsNList)

dsN <- exportAromaUnitPscnBinarySet(dsNList)
print(dsN)

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aroma.affymetrix documentation built on July 18, 2022, 5:07 p.m.