Nothing
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-50, timestamp=TRUE)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Setting up data set
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
dataSetName <- "Affymetrix-CytoScanHD"
chipType <- "CytoScanHD_Array"
csR <- AffymetrixCelSet$byName(dataSetName, chipType=chipType)
print(csR)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Allele-specific CRMAv2
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
dsNList <- doASCRMAv2(csR, verbose=verbose)
print(dsNList)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Segmentation
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
seg <- CbsModel(dsNList$total)
print(seg)
ce <- ChromosomeExplorer(seg)
print(ce)
process(ce, arrays=1, chromosomes=1:2, verbose=verbose)
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