inst/testScripts/system/chipTypes/HG-U133_Plus_2/12.doGCRMA.R

library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)

dataSet <- "GSE9890"
chipType <- "HG-U133_Plus_2"
csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)

res <- doGCRMA(csR, drop=FALSE, verbose=verbose)
print(res)

ces <- doGCRMA(csR, verbose=verbose)
print(ces)

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aroma.affymetrix documentation built on July 18, 2022, 5:07 p.m.