inst/testScripts/system/chipTypes/Hs_PromPR_v02/01a.downloadAnnotationData.R

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

library("aroma.core")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
ar <- AromaRepository(verbose=TRUE)

verbose && enter(verbose, "Downloading annotation data")

chipType <- "Hs_PromPR_v02"
verbose && cat(verbose, "Chip type: ", chipType)

pathname <- downloadCDF(ar, chipType)
verbose && cat(verbose, "CDF: ", pathname)

#pathname <- downloadACS(ar, chipType, tags=".*")
pathname <- downloadACS(ar, chipType)
verbose && cat(verbose, "ACS: ", pathname)

#pathname <- downloadACM(ar, chipType, tags=".*")
pathname <- downloadACM(ar, chipType)
verbose && cat(verbose, "ACM: ", pathname)

pathname <- downloadACP(ar, chipType, tags="unique")
verbose && cat(verbose, "ACP: ", pathname)

verbose && exit(verbose)