inst/testScripts/system/chipTypes/Mapping10K_Xba142/01a.downloadAnnotationData.R

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

library("aroma.core")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)

ar <- AromaRepository(verbose=-100)

verbose && enter(verbose, "Downloading annotation data")

chipType <- "Mapping10K_Xba142"
verbose && cat(verbose, "Chip type: ", chipType)

pathname <- downloadCDF(ar, chipType)
verbose && cat(verbose, "CDF: ", pathname)

pathname <- downloadACS(ar, chipType, tags=".*")
verbose && cat(verbose, "ACS: ", pathname)

pathname <- downloadUGP(ar, chipType, tags=".*")
verbose && cat(verbose, "UGP: ", pathname)

pathname <- downloadUFL(ar, chipType, tags=".*")
verbose && cat(verbose, "UFL: ", pathname)

verbose && exit(verbose)