Nothing
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-4, timestamp=TRUE)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Setup
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
dataSet <- "GSE8605"
chipType <- "Mapping10K_Xba142"
csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType, verbose=verbose)
# Process only the first six arrays (and in reverse order)
subset <- 6:1
csR <- csR[subset]
print(csR)
sampleNames <- getNames(csR)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# CRMAv1
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
res <- doASCRMAv1(csR, drop=FALSE, verbose=verbose)
print(res)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Sanity checks
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Assert same output as input arrays (in the same order)
for (key in names(res)[-1]) {
ds <- res[[key]]
if (!inherits(ds, "GenericDataFileSet")) next
stopifnot(getNames(ds) == sampleNames)
}
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