inst/testScripts/system/chipTypes/Mapping10K_Xba142/31.ACC,mergeShifts.R

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-50, timestamp=TRUE)

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# Setup
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dataSet <- "GSE8605"
chipType <- "Mapping10K_Xba142"

csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)
print(csR)


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# Allelic-crosstalk calibration with and without mergeShifts
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acc <- AllelicCrosstalkCalibration(csR, mergeShifts=TRUE)
print(acc)

csC <- process(acc, verbose=verbose)
print(csC)


acc <- AllelicCrosstalkCalibration(csR, mergeShifts=FALSE)
print(acc)

csC <- process(acc, verbose=verbose)
print(csC)