Nothing
path <- system.file("testScripts/R", package="aroma.affymetrix")
pathname <- file.path(path, "downloadUtils.R")
source(pathname)
verbose && enter(verbose, "Downloading raw data")
##########################################################################
# Data set:
# GSE34754/
# Mapping250K_Nsp/
# GSM854615.CEL, ..., GSM854626.CEL [12]
#
# Overall design:
# Breast cancer cell lines HCC38 and HCC1143 and paired B
# lymphoblastoid cell lines HCC38-BL and HCC1143-BL were
# purchased from ATCC. [...] To mimic tumor containing normal cells,
# DNA from HCC38 and HCC1143 cells was mixed with DNA from autologous
# B lymphoblastoid cells HCC38-BL and HCC1143-BL, respectively,
# in ratios (w/w) 100:0, 80:20, 60:40, 40:60, and 20:80.
#
# URL: https://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE34754
##########################################################################
dataSet <- "GSE34754"
chipType <- "Mapping250K_Nsp"
verbose && cat(verbose, "Data set: ", dataSet)
ds <- downloadGeoRawDataSet(dataSet, chipType=chipType)
print(ds)
## AffymetrixCelSet:
## Name: GSE34754
## Tags:
## Path: rawData/GSE34754/Mapping250K_Nsp
## Platform: Affymetrix
## Chip type: Mapping250K_Nsp
## Number of arrays: 12
## Names: GSM854615, GSM854616, GSM854617, ..., GSM854626 [12]
## Time period: 2011-03-29 20:30:55 -- 2011-04-05 16:54:26
## Total file size: 751.17MB
## RAM: 0.02MB
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