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inst/testScripts/system/chipTypes/Test3/11.ArrayExplorer.R
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets
library("aroma.affymetrix")
verbose <- Verbose(threshold=-4, timestamp=TRUE)
dataSet <- "FusionSDK_Test3"
chipType <- "Test3"
csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)
print(csR)
cdf <- getCdf(csR)
print(cdf)
ae <- ArrayExplorer(csR)
setColorMaps(ae, "log2,yellow")
process(ae, verbose=verbose)
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aroma.affymetrix documentation built on July 18, 2022, 5:07 p.m.
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library("aroma.affymetrix")
verbose <- Verbose(threshold=-4, timestamp=TRUE)
dataSet <- "FusionSDK_Test3"
chipType <- "Test3"
csR <- AffymetrixCelSet$byName(dataSet, chipType=chipType)
print(csR)
cdf <- getCdf(csR)
print(cdf)
ae <- ArrayExplorer(csR)
setColorMaps(ae, "log2,yellow")
process(ae, verbose=verbose)
Try the aroma.affymetrix package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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