bcpa: Behavioral change point analysis of animal movement

The Behavioral Change Point Analysis (BCPA) is a method of identifying hidden shifts in the underlying parameters of a time series, developed specifically to be applied to animal movement data which is irregularly sampled. The method is based on: E. Gurarie, R. Andrews and K. Laidre A novel method for identifying behavioural changes in animal movement data (2009) Ecology Letters 12:5 395-408.

Author
Eliezer Gurarie <eliezg@uw.edu>
Date of publication
2014-11-02 09:15:10
Maintainer
Eliezer Gurarie <eliezg@uw.edu>
License
Unlimited
Version
1.1

View on CRAN

Man pages

bcpa-package
Behavioral Change Point Analysis
ChangePointSummary
Obtain summary of BCPA analysis
DiagPlot
Diagnostic plot for BCPA
GetBestBreak
Find most likely change point in irregular time series
GetDoubleL
Obtain log-likelihood and parameter estimates for a given...
GetL
Obtain likelihood of gappy Gaussian time series
GetModels
Model selection at a known breakpoint
GetRho
Characteristic time / auto-correlation for irregular time...
GetVT
Obtain VT table from Track
MakeTrack
Make Track
PartitionParameters
Partition parameters
PathPlot
Path plot of BCPA output
PhasePlot
Phase plot of BCPA output
plot.bcpa
Plotting method for BCPA output
plot.track
Plot Track
Simp
Simulated Chimp (Simp) Data
WindowSweep
Perform window sweep for BCPA

Files in this package

bcpa
bcpa/inst
bcpa/inst/doc
bcpa/inst/doc/bcpa.rnw
bcpa/inst/doc/bcpa.pdf
bcpa/inst/doc/bcpa.R
bcpa/src
bcpa/src/GetL.cpp
bcpa/src/Makevars
bcpa/src/Makevars.win
bcpa/src/RcppExports.cpp
bcpa/NAMESPACE
bcpa/data
bcpa/data/Simp.rda
bcpa/R
bcpa/R/ChangePointSummary.R
bcpa/R/WindowSweep.R
bcpa/R/GetRho.R
bcpa/R/bcpa.R-internal.R
bcpa/R/plot.bcpa.r
bcpa/R/PhasePlot.r
bcpa/R/plot.track.r
bcpa/R/DiagPlot.r
bcpa/R/RcppExports.R
bcpa/R/PartitionParameters.R
bcpa/R/PathPlot.r
bcpa/R/GetBestBreak.R
bcpa/R/GetVT.r
bcpa/R/GetDoubleL.R
bcpa/R/GetModels.R
bcpa/R/MakeTrack.R
bcpa/vignettes
bcpa/vignettes/bcpa-concordance.tex
bcpa/vignettes/bcpa.rnw
bcpa/MD5
bcpa/build
bcpa/build/vignette.rds
bcpa/DESCRIPTION
bcpa/man
bcpa/man/ChangePointSummary.Rd
bcpa/man/GetModels.Rd
bcpa/man/GetBestBreak.Rd
bcpa/man/GetL.Rd
bcpa/man/WindowSweep.Rd
bcpa/man/PathPlot.Rd
bcpa/man/GetRho.Rd
bcpa/man/bcpa-package.Rd
bcpa/man/GetDoubleL.Rd
bcpa/man/PhasePlot.Rd
bcpa/man/PartitionParameters.Rd
bcpa/man/GetVT.Rd
bcpa/man/Simp.Rd
bcpa/man/plot.bcpa.Rd
bcpa/man/DiagPlot.Rd
bcpa/man/MakeTrack.Rd
bcpa/man/plot.track.Rd