Description Usage Arguments Details Author(s) References See Also
Determine the crosscorrelations of atomic displacements.
1 
x 
a numeric matrix of Cartesian coordinates with a row per
structure/frame which will br passed to 
... 
additional arguments passed to the methods

dccm
is a generic function calling the corresponding function
determined by the class of the input argument x
. Use
methods("dccm")
to get all the methods for dccm
generic:
dccm.xyz
will be used when x
is a numeric matrix
containing Cartesian coordinates (e.g. trajectory data).
dccm.pca
will calculate the crosscorrelations based on
an pca
object.
dccm.nma
will calculate the crosscorrelations based on
an nma
object. Similarly, dccm.enma
will
calculate the correlation matrices based on an ensemble of nma
objects (as obtained from function nma.pdbs
).
plot.dccm
and pymol.dccm
provides
convenient functionality to plot a correlation map, and visualize the
correlations in the structure, respectively.
See examples for each corresponding function for more details.
Barry Grant, Lars Skjaerven
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
dccm.xyz
, dccm.nma
,
dccm.enma
, dccm.pca
, plot.dccm
,
pymol.dccm
.
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