API for bio3d
Biological Structure Analysis

Global functions
.print.fasta.ali Man page
aa.index Man page
aa.table Man page
aa123 Man page
aa2index Man page
aa2mass Man page
aa321 Man page
aanma Man page
aanma.pdb Man page
aanma.pdbs Man page Source code
aln2html Man page
amsm.xyz Man page
angle.xyz Man page
annotation Man page
as.fasta Man page
as.pdb Man page Source code
as.pdb.default Man page Source code
as.pdb.mol2 Man page Source code
as.pdb.prmtop Man page Source code
as.select Man page
as.xyz Man page
atom.index Man page
atom.select Man page
atom.select.mol2 Man page Source code
atom.select.pdb Man page Source code
atom.select.prmtop Man page
atom2ele Man page Source code
atom2ele.default Man page Source code
atom2ele.pdb Man page Source code
atom2mass Man page Source code
atom2mass.default Man page Source code
atom2mass.pdb Man page Source code
atom2xyz Man page
basename.pdb Man page Source code
bhattacharyya Man page Source code
bhattacharyya.array Man page Source code
bhattacharyya.enma Man page Source code
bhattacharyya.matrix Man page Source code
bhattacharyya.nma Man page Source code
bhattacharyya.pca Man page Source code
binding.site Man page
bio3d Man page
bio3d-package Man page
biounit Man page Source code
blast.pdb Man page
bounds Man page
bounds.sse Man page Source code
build.hessian Man page
bwr.colors Man page
calcAlnModes Source code
calcRMSIP Source code
cat.pdb Man page Source code
chain.pdb Man page
check.residue.ambiguity Source code
check.sse Source code
check.utility Man page Source code
clean.pdb Man page
close.pb Source code
cmap Man page Source code
cmap.default Man page Source code
cmap.pdb Man page Source code
cmap.xyz Man page Source code
cna Man page
cna.dccm Man page Source code
cna.ensmb Man page Source code
cnapath Man page Source code
cnapath.core Source code
com Man page
com.pdb Man page
com.xyz Man page
combine.select Man page Source code
community.aln Man page Source code
community.tree Man page Source code
consensus Man page
conserv Man page
convert.pdb Man page
core Man page
core.find Man page Source code
core.find.default Man page Source code
core.find.pdb Man page Source code
core.find.pdbs Man page
cov.enma Man page Source code
cov.nma Man page Source code
cov2dccm Man page Source code
covsoverlap Man page Source code
covsoverlap.enma Man page Source code
covsoverlap.nma Man page Source code
dccm Man page
dccm.egnm Man page
dccm.enma Man page
dccm.gnm Man page
dccm.nma Man page
dccm.pca Man page
dccm.xyz Man page
deformation.nma Man page
diag.ind Man page
diag.rtb Source code
difference.vector Man page
dist.xyz Man page
dm Man page
dm.pdb Man page
dm.pdbs Man page
dm.xyz Man page Source code
dm.xyz1 Source code
dssp Man page
dssp.pdb Man page
dssp.pdbs Man page
dssp.xyz Man page Source code
ebi_msa Source code
elements Man page
entropy Man page
example.data Man page
fetchmodes Source code
ff.aaenm Man page
ff.aaenm2 Man page Source code
ff.anm Man page
ff.calpha Man page
ff.pfanm Man page
ff.reach Man page
ff.sdenm Man page
filter.cmap Man page Source code
filter.dccm Man page Source code
filter.identity Man page Source code
filter.rmsd Man page Source code
fit.xyz Man page
fluct.nma Man page
format.log Source code
formula2mass Man page
gap.inspect Man page
geostas Man page Source code
geostas.default Man page Source code
geostas.enma Man page Source code
geostas.nma Man page Source code
geostas.pdb Man page Source code
geostas.pdbs Man page Source code
geostas.xyz Man page Source code
get.blast Man page Source code
get.pdb Man page
get.seq Man page
gnm Man page Source code
gnm.pdb Man page Source code
gnm.pdbs Man page Source code
hclustplot Man page
hivp Man page
hmmer Man page
identify.cna Man page Source code
inner.prod Man page
inspect.connectivity Man page
is.gap Man page
is.mol2 Man page Source code
is.pdb Man page Source code
is.pdbs Man page Source code
is.select Man page Source code
is.xyz Man page Source code
kinesin Man page
layout.cna Man page Source code
lbio3d Man page
lmi Man page Source code
load.enmff Man page
mask Man page Source code
mask.dccm Man page Source code
match.chain Source code
match.elena Source code
match.eleno Source code
match.elety Source code
match.insert Source code
match.resid Source code
match.resno Source code
match.segid Source code
match.statbit Source code
match.type Source code
mktrj Man page
mktrj.enma Man page
mktrj.nma Man page
mktrj.pca Man page
mono.colors Man page
motif.find Man page
mustang Man page
nds2ids Source code
network.amendment Man page Source code
nit.pb Source code
nma Man page
nma.pdb Man page
nma.pdbs Man page
nma.trim.hessian.rtb Source code
normalize.vector Man page
orient.pdb Man page
overlap Man page
pairwise Man page
parse.pdb.remark350 Source code
pca Man page
pca.array Man page
pca.pdbs Man page
pca.tor Man page
pca.xyz Man page
pdb.annotate Man page
pdb.pfam Man page Source code
pdb2aln Man page
pdb2aln.ind Man page
pdb2sse Man page Source code
pdbaln Man page Source code
pdbfit Man page Source code
pdbfit.pdb Man page Source code
pdbfit.pdbs Man page Source code
pdbs Man page
pdbs2pdb Man page
pdbs2sse Man page
pdbseq Man page
pdbsplit Man page
pfam Man page
plot.bio3d Man page Source code
plot.blast Man page
plot.cmap Man page Source code
plot.cna Man page Source code
plot.core Man page
plot.dccm Man page Source code
plot.dmat Man page
plot.enma Man page
plot.fasta Man page
plot.fluct Man page
plot.geostas Man page Source code
plot.hmmer Man page
plot.matrix.loadings Man page Source code
plot.nma Man page
plot.pca Man page
plot.pca.loadings Man page
plot.pca.score Man page
plot.pca.scree Man page
plot.rmsip Man page
plotb3 Man page Source code
print.cna Man page Source code
print.cnapath Man page Source code
print.core Man page Source code
print.enma Man page
print.fasta Man page Source code
print.fasta.ali Source code
print.geostas Man page
print.mol2 Man page Source code
print.nma Man page
print.pca Man page
print.pdb Man page Source code
print.prmtop Man page Source code
print.rle2 Man page Source code
print.select Man page Source code
print.sse Man page
print.xyz Man page Source code
project.pca Man page
prune.cna Man page Source code
pymol Man page Source code
pymol.dccm Man page Source code
pymol.modes Man page Source code
pymol.nma Man page Source code
pymol.pca Man page Source code
pymol.pdbs Man page Source code
read.all Man page
read.cif Man page Source code
read.crd Man page
read.crd.amber Man page Source code
read.crd.charmm Man page
read.dcd Man page
read.fasta Man page
read.fasta.pdb Man page
read.mol2 Man page
read.ncdf Man page
read.pdb Man page Source code
read.pdb2 Man page
read.pdcBD Man page
read.pqr Man page
read.prmtop Man page Source code
read_cif Source code
read_crd Source code
read_pdb Source code
read_prmtop Source code
resno2str Source code
rgyr Man page Source code
rle2 Man page Source code
rmsd Man page
rmsf Man page
rmsip Man page Source code
rmsip.default Man page Source code
rmsip.enma Man page Source code
rot.lsq Man page
rtb Man page Source code
sdENM Man page
seq2aln Man page Source code
seqaln Man page
seqaln.pair Man page
seqbind Man page Source code
seqidentity Man page
setup.ncore Man page Source code
sip Man page Source code
sip.default Man page Source code
sip.enma Man page Source code
sip.nma Man page Source code
sse.bridges Man page
store.atom Man page
stride Man page
struct.aln Man page
summary.cna Man page Source code
summary.cnapath Man page Source code
summary.pdb Man page Source code
torsion.pdb Man page
torsion.xyz Man page
tr Source code
transducin Man page
trim Man page Source code
trim.mol2 Man page Source code
trim.pdb Man page
trim.pdbs Man page Source code
trim.xyz Man page
unbound Man page
uniprot Man page Source code
update.chain Source code
update.log Source code
update.pb Source code
var.pdbs Man page
var.xyz Man page
vec2resno Man page
vmd Man page Source code
vmd.cna Man page Source code
vmd.cnapath Man page Source code
vmd_colors Man page Source code
wrap.tor Man page
write.crd Man page
write.fasta Man page
write.mol2 Man page Source code
write.ncdf Man page
write.pdb Man page
write.pir Man page
write.pqr Man page
xyz2atom Man page Source code
xyz2z.pca Man page Source code
z2xyz.pca Man page Source code
bio3d documentation built on April 3, 2018, 9:05 a.m.