plot.geostas | R Documentation |
Plot an atomic movement similarity matrix with domain annotation
## S3 method for class 'geostas'
plot(x, at=seq(0, 1, 0.1), main="AMSM with Domain Assignment",
col.regions=rev(heat.colors(200)),
margin.segments=x$grps, ...)
x |
an object of type |
at |
numeric vector specifying the levels to be colored. |
main |
a main title for the plot. |
col.regions |
color vector. See |
margin.segments |
a numeric vector of cluster membership as obtained from cutree() or other community detection method. This will be used for bottom and left margin annotation. |
... |
additional graphical parameters for
|
This is a wrapper function for plot.dccm
with appropriate
adjustments for plotting atomic movement similarity matrix obtained
from function geostas
.
See the plot.dccm
for more details.
Called for its effect.
Barry Grant, Lars Skjaerven
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
plot.dccm
, geostas
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