uniprot: Fetch UniProt Entry Data.

In bio3d: Biological Structure Analysis

Fetch UniProt Entry Data.

Description

Fetch protein sequence and functional information from the UniProt database.

Usage

uniprot(accid)

Arguments

accid

UniProt accession id.

Details

This is a basic utility function for downloading information from the UniProt database. UniProt contains protein sequence and functional information.

Value

Returns a list object with the following components:

accession	a character vector with UniProt accession id's.
name	abbreviated name.
fullName	full recommended protein name.
shortName	short protein name.
sequence	protein sequence.
gene	gene names.
organism	organism.
taxon	taxonomic lineage.

Author(s)

Lars Skjaerven

References

Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.

See also the UniProt web-site for more information:
https://www.uniprot.org/.

See Also

blast.pdb, get.seq

Examples

## Not run: 
# UNIPROT server connection required - testing excluded

prot <- uniprot('PH4H_HUMAN')
prot$fullName
prot$sequence

## End(Not run)

bio3d documentation built on Oct. 30, 2024, 1:08 a.m.