brms: Bayesian Regression Models using Stan
Version 1.7.0

Fit Bayesian generalized (non-)linear multilevel models using Stan for full Bayesian inference. A wide range of distributions and link functions are supported, allowing users to fit -- among others -- linear, robust linear, count data, survival, response times, ordinal, zero-inflated, hurdle, and even self-defined mixture models all in a multilevel context. Further modeling options include non-linear and smooth terms, auto-correlation structures, censored data, meta-analytic standard errors, and quite a few more. In addition, all parameters of the response distribution can be predicted in order to perform distributional regression. Prior specifications are flexible and explicitly encourage users to apply prior distributions that actually reflect their beliefs. Model fit can easily be assessed and compared with posterior predictive checks and leave-one-out cross-validation.

AuthorPaul-Christian Bürkner [aut, cre]
Date of publication2017-05-23 17:29:28 UTC
MaintainerPaul-Christian Bürkner <paul.buerkner@gmail.com>
LicenseGPL (>= 3)
Version1.7.0
URL https://github.com/paul-buerkner/brms https://groups.google.com/forum/#!forum/brms-users
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("brms")

Getting started

Package overview
README.md
Estimating Distributional Models with brms"
Estimating Monotonic Effects with brms"
Estimating Non-Linear Models with brms"
Estimating Phylogenetic Multilevel Models with brms"
Parameterization of Response Distributions in brms"

Popular man pages

brm: Fit Bayesian Generalized (Non-)Linear Multilevel Models
brmsfamily: Special Family Functions for 'brms' Models
brmsformula: Set up a model formula for use in 'brms'
brms-package: Bayesian Regression Models using Stan
marginal_effects: Display marginal effects of predictors
predict.brmsfit: Model Predictions of 'brmsfit' Objects
set_prior: Prior Definitions for 'brms' Models
See all...

All man pages Function index File listing

Man pages

add_ic: Add information criteria to fitted model objects
addition-terms: Additional Response Information
as.mcmc.brmsfit: Extract posterior samples for use with the 'coda' package
AsymLaplace: The Asymmetric Laplace Distribution
brm: Fit Bayesian Generalized (Non-)Linear Multilevel Models
brmsfamily: Special Family Functions for 'brms' Models
brmsfit-class: Class 'brmsfit' of models fitted with the 'brms' package
brmsformula: Set up a model formula for use in 'brms'
brmshypothesis: Decriptions of 'brmshypothesis' Objects
brms-package: Bayesian Regression Models using Stan
coef.brmsfit: Extract Model Coefficients
compare_ic: Compare Information Criteria of Different Models
control_params: Extract Control Parameters of the NUTS Sampler
cor_ar: AR(p) correlation structure
cor_arma: ARMA(p,q) correlation structure
cor_arr: ARR(r) correlation structure
cor_brms: Correlation structure classes for the 'brms' package
cor_bsts: Basic Bayesian Structural Time Series
cor_fixed: Fixed user-defined covariance matrices
cor_ma: MA(q) correlation structure
cs: Category Specific Predictors in 'brms' Models
diagnostic-quantities: Extract Diagnostic Quantities of 'brms' Models
epilepsy: Epileptic seizure counts
ExGaussian: The Exponentially Modified Gaussian Distribution
expose_functions: Expose user-defined 'Stan' functions
expp1: Exponential function plus one.
fitted.brmsfit: Extract Model Fitted Values of 'brmsfit' Objects
fixef.brmsfit: Extract Population-Level Estimates
Frechet: The Frechet Distribution
GenExtremeValue: The Generalized Extreme Value Distribution
get_prior: Overview on Priors for 'brms' Models
gp: Set up Gaussian process terms in 'brms'
gr: Set up basic grouping terms in 'brms'
horseshoe: Set up a horseshoe prior in 'brms'
hypothesis: Non-Linear Hypothesis Testing
inhaler: Clarity of inhaler instructions
InvGaussian: The Inverse Gaussian Distribution
inv_logit_scaled: Scaled inverse logit-link
is.brmsfit: Checks if argument is a 'brmsfit' object
is.brmsformula: Checks if argument is a 'brmsformula' object
is.brmsprior: Checks if argument is a 'brmsprior' object
is.brmsterms: Checks if argument is a 'brmsterms' object
is.cor_brms: Check if argument is a correlation structure
kidney: Infections in kidney patients
lasso: Set up a lasso prior in 'brms'
launch_shiny: Interface to 'shinystan'
logit_scaled: Scaled logit-link
log_lik.brmsfit: Compute the Pointwise Log-Likelihood
logm1: Logarithm with a minus one offset.
LOO: Compute the LOO information criterion
loo_predict.brmsfit: Compute Weighted Expectations Using LOO
make_stancode: Stan Code for 'brms' Models
make_standata: Data for 'brms' Models
marginal_effects: Display marginal effects of predictors
marginal_smooths: Display Smooth Terms
me: Predictors with Measurement Error in 'brms' Models
mixture: Finite Mixture Families in 'brms'
mm: Set up multi-membership grouping terms in 'brms'
mo: Monotonic Predictors in 'brms' Models
MultiNormal: The Multivariate Normal Distribution
MultiStudentT: The Multivariate Student-t Distribution
ngrps: Number of levels
nsamples: Number of Posterior Samples
pairs.brmsfit: Create a matrix of output plots from a 'brmsfit' object
parnames: Extract Parameter Names
parse_bf: Parse Formulas of 'brms' Models
plot.brmsfit: Trace and Density Plots for MCMC Samples
posterior_samples: Extract posterior samples
pp_check.brmsfit: Posterior Predictive Checks for 'brmsfit' Objects
pp_mixture: Posterior Probabilities of Mixture Component Memberships
predict.brmsfit: Model Predictions of 'brmsfit' Objects
print.brmsfit: Print a summary for a fitted model represented by a 'brmsfit'...
print.brmsprior: Print method for 'brmsprior' objects
prior_samples: Extract prior samples
prior_summary.brmsfit: Extract Priors of a Bayesian Model Fitted with 'brms'
ranef.brmsfit: Extract Group-Level Estimates
residuals.brmsfit: Extract Model Residuals from brmsfit Objects
restructure: Retructure Old 'brmsfit' Objects
set_prior: Prior Definitions for 'brms' Models
stancode: Extract Stan Model Code
standata: Extract Data passed to Stan
stanplot: MCMC Plots Implemented in 'bayesplot'
StudentT: The Student-t Distribution
summary.brmsfit: Create a summary of a fitted model represented by a 'brmsfit'...
update.brmsfit: Update 'brms' models
VarCorr.brmsfit: Extract Variance and Correlation Components
vcov.brmsfit: Covariance and Correlation Matrix of Population-Level Effects
VonMises: The von Mises Distribution
WAIC: Compute the WAIC
Wiener: The Wiener Diffusion Model Distribution

Functions

AsymLaplace Man page
Beta Man page Source code
ExGaussian Man page
Frechet Man page
GenExtremeValue Man page
InvGaussian Man page
LOO Man page Source code
LOO.brmsfit Man page Man page Source code
MultiNormal Man page
MultiStudentT Man page
Phi Source code
SW Source code
StudentT Man page
VarCorr Man page
VarCorr.brmsfit Man page Source code
VonMises Man page
WAIC Man page Source code
WAIC.brmsfit Man page Man page Source code
Wiener Man page
acat Man page Source code
ad_families Source code
add_ic Man page Source code
add_ic.brmsfit Man page Source code
add_samples Source code
addition-terms Man page
adjust_old_forked Source code
algorithm Source code
all_terms Source code
allows_cs Source code
allvars_formula Source code
amend_formula Source code
amend_newdata Source code
amend_terms Source code
args_not_for_add_ic Source code
arma_predictor Source code
arr_design_matrix Source code
array2list Source code
as.array.brmsfit Man page Source code
as.data.frame.brmsVarCorr Man page Source code
as.data.frame.brmsfit Man page Source code
as.matrix.brmsfit Man page Source code
as.mcmc Man page
as.mcmc.brmsfit Man page Source code
as_draws_matrix Source code
asym_laplace Man page Source code
auxpar_class Source code
auxpar_family Source code
auxpar_family.default Source code
auxpar_family.mixfamily Source code
auxpar_id Source code
auxpars Source code
avoid_auxpars Source code
bernoulli Man page Source code
bf Man page Source code
brm Man page Source code
brmdata Man page Source code
brms Man page
brms-package Man page
brmsfamily Man page Source code Source code
brmsfit Man page Source code
brmsfit-class Man page
brmsformula Man page Source code
brmshypothesis Man page
brmsprior Source code
brmssummary Source code
c.brmsprior Source code
categorical Man page Source code
cbrt Source code
change_cs Source code
change_effects Source code
change_effects.btl Source code
change_effects.btnl Source code
change_fe Source code
change_gp Source code
change_me Source code
change_mo Source code
change_old_re Source code
change_old_re2 Source code
change_old_sm Source code
change_prior Source code
change_re Source code
change_re_levels Source code
change_simple Source code
change_sm Source code
check_autocor Source code
check_brm_input Source code
check_data_old_mv Source code
check_family Source code
check_fauxpars Source code
check_nlpar Source code
check_prior Source code
check_prior_content Source code
check_prior_special Source code
check_prior_special.brmsterms Source code
check_prior_special.btl Source code
check_prior_special.btnl Source code
check_re_formula Source code
choose_N Source code
cloglog Source code
coef.brmsfit Man page Source code
collapse Source code
collapse_comma Source code
collapse_lists Source code
combine_duplicates Source code
combine_groups Source code
compare_ic Man page Source code
compute_ic Source code
compute_quantities Source code
contains_samples Source code
control_params Man page Source code
control_params.brmsfit Man page Source code
cor.ar Man page Source code
cor.arma Man page Source code
cor.ma Man page Source code
cor_ar Man page Source code
cor_arma Man page Source code
cor_arr Man page Source code
cor_brms Man page
cor_brms-class Man page
cor_bsts Man page Source code
cor_bsts-class Man page
cor_fixed Man page Source code
cor_ma Man page Source code
cov_exp_quad Source code
cov_fixed Man page Source code
cratio Man page Source code
cs Man page Source code
cs_predictor Source code
cse Man page Source code
cumulative Man page Source code
dacat Source code
dasym_laplace Man page Source code
data_cs Source code
data_effects Source code
data_effects.btl Source code
data_effects.btnl Source code
data_fe Source code
data_gp Source code
data_gr Source code
data_me Source code
data_mixture Source code
data_mo Source code
data_offset Source code
data_re Source code
data_rsv_intercept Source code
dcategorical Source code
dcratio Source code
dcumulative Source code
default_plot_pars Source code
deparse_no_string Source code
deprecated_brm_args Source code
dexgaussian Man page Source code
dfrechet Man page Source code
dgen_extreme_value Man page Source code
diagnostic-quantities Man page
diff_quad Source code
dim_mu Source code
dinv_gaussian Man page Source code
dirichlet Source code
dmulti_normal Man page Source code
dmulti_student_t Man page Source code
do_renaming Source code
dsratio Source code
dstudent_t Man page Source code
dvon_mises Man page Source code
dwiener Man page Source code
empty_brmsprior Source code
empty_ranef Source code
epilepsy Man page
eval2 Source code
eval_rhs Source code
eval_silent Source code
eval_smooth Source code
evidence_ratio Source code
exclude_pars Source code
exgaussian Man page Source code
exp2 Source code
expand Source code
expand_matrix Source code
expect_match2 Source code
exponential Man page Source code
expose_functions Man page Source code
expose_functions.brmsfit Man page Source code
expp1 Man page Source code
extract_draws Source code
extract_draws.brmsfit Source code
extract_draws.btl Source code
extract_draws.btnl Source code
extract_draws_autocor Source code
extract_draws_cs Source code
extract_draws_fe Source code
extract_draws_gp Source code
extract_draws_me Source code
extract_draws_mo Source code
extract_draws_re Source code
extract_draws_sm Source code
extract_pars Source code
extract_valid_sample Source code
fabs Source code
family.brmsfit Source code
family_names Source code
family_names.default Source code
family_names.family Source code
family_names.mixfamily Source code
fe_predictor Source code
find_names Source code
first_greater Source code
first_not_null Source code
fitted.brmsfit Man page Source code
fitted_acat Source code
fitted_asym_laplace Source code
fitted_bernoulli Source code
fitted_beta Source code
fitted_binomial Source code
fitted_categorical Source code
fitted_catordinal Source code
fitted_cauchy Source code
fitted_cratio Source code
fitted_cumulative Source code
fitted_default Source code
fitted_exgaussian Source code
fitted_exponential Source code
fitted_frechet Source code
fitted_gamma Source code
fitted_gaussian Source code
fitted_gen_extreme_value Source code
fitted_geometric Source code
fitted_hurdle_gamma Source code
fitted_hurdle_lognormal Source code
fitted_hurdle_negbinomial Source code
fitted_hurdle_poisson Source code
fitted_inverse.gaussian Source code
fitted_lognormal Source code
fitted_mixture Source code
fitted_negbinomial Source code
fitted_poisson Source code
fitted_sratio Source code
fitted_student Source code
fitted_trunc Source code
fitted_trunc_binomial Source code
fitted_trunc_discrete Source code
fitted_trunc_exponential Source code
fitted_trunc_gamma Source code
fitted_trunc_gaussian Source code
fitted_trunc_geometric Source code
fitted_trunc_lognormal Source code
fitted_trunc_negbinomial Source code
fitted_trunc_poisson Source code
fitted_trunc_student Source code
fitted_trunc_weibull Source code
fitted_von_mises Source code
fitted_weibull Source code
fitted_wiener Source code
fitted_zero_inflated_beta Source code
fitted_zero_inflated_binomial Source code
fitted_zero_inflated_negbinomial Source code
fitted_zero_inflated_poisson Source code
fitted_zero_one_inflated_beta Source code
fix_factor_contrasts Source code
fixef Man page
fixef.brmsfit Man page Source code
fixef_pars Source code
formula.brmsfit Source code
formula2str Source code
frechet Man page Source code
gen_extreme_value Man page Source code
geometric Man page Source code
get_all_effects Source code
get_all_effects.brmsterms Source code
get_all_effects.btl Source code
get_all_effects.btnl Source code
get_ar Source code
get_arg Source code
get_arr Source code
get_auxpar Source code
get_bound Source code
get_bounds Source code
get_cornames Source code
get_cov_matrix Source code
get_cov_matrix_ar1 Source code
get_cov_matrix_arma1 Source code
get_cov_matrix_ident Source code
get_cov_matrix_ma1 Source code
get_disc Source code
get_effect Source code
get_effect.brmsterms Source code
get_effect.btl Source code
get_effect.btnl Source code
get_estimate Source code
get_eta Source code
get_gp_labels Source code
get_ma Source code
get_matches Source code
get_matches_expr Source code
get_me_labels Source code
get_model_matrix Source code
get_pct_invalid Source code
get_prior Man page Source code
get_re Source code
get_re.brmsterms Source code
get_re.btl Source code
get_re.btnl Source code
get_re_terms Source code
get_se Source code
get_shape Source code
get_sigma Source code
get_sm_labels Source code
get_summary Source code
get_table Source code
get_theta Source code
get_var_combs Source code
get_zi_hu Source code
gp Man page Source code
gp_predictor Source code
gr Man page Source code
grepl_expr Source code
has_arma Source code
has_beta Source code
has_cat Source code
has_cens Source code
has_cs Source code
has_intercept Source code
has_kappa Source code
has_nu Source code
has_phi Source code
has_rsv_intercept Source code
has_shape Source code
has_sigma Source code
has_smooths Source code
has_trials Source code
has_xi Source code
horseshoe Man page Source code
hurdle_gamma Man page Source code
hurdle_lognormal Man page Source code
hurdle_negbinomial Man page Source code
hurdle_poisson Man page Source code
hypot Source code
hypothesis Man page Source code
hypothesis.brmsfit Man page Source code
hypothesis.default Man page Source code
hypothesis_internal Source code
ilink Source code
illegal_group_expr Source code
incgamma Source code
inhaler Man page
inv Source code
inv_cloglog Source code
inv_logit Source code
inv_logit_scaled Man page Source code
inv_sqrt Source code
inv_square Source code
is.brmsfit Man page Source code
is.brmsformula Man page Source code
is.brmsprior Man page Source code
is.brmsterms Man page Source code
is.btl Source code
is.btnl Source code
is.cor_arma Man page Source code
is.cor_brms Man page Source code
is.cor_bsts Man page Source code
is.cor_fixed Man page Source code
is.family Source code
is.formula Source code
is.ic Source code
is.mixfamily Source code
isFALSE Source code
isNA Source code
isNULL Source code
is_2PL Source code
is_asym_laplace Source code
is_auxpar_name Source code
is_binary Source code
is_categorical Source code
is_count Source code
is_equal Source code
is_exgaussian Source code
is_forked Source code
is_gev Source code
is_hurdle Source code
is_linear Source code
is_lognormal Source code
is_mv Source code
is_nonlinear Source code
is_old_categorical Source code
is_old_lognormal Source code
is_old_mv Source code
is_ordinal Source code
is_skewed Source code
is_symmetric Source code
is_trunc Source code
is_wholenumber Source code
is_wiener Source code
is_zero_inflated Source code
is_zero_one_inflated Source code
kidney Man page
lasso Man page Source code
launch_shiny Man page Source code
launch_shiny.brmsfit Man page Source code
lc Source code
lhs Source code
lhs_terms Source code
limit_chars Source code
linear_predictor Source code
linear_predictor_mv Source code
link Source code
links_auxpars Source code
log1m Source code
log1m_exp Source code
log1m_inv_logit Source code
log1p_exp Source code
logLik.brmsfit Man page Source code
log_diff_exp Source code
log_inv_logit Source code
log_lik Man page
log_lik.brmsfit Man page Source code
log_posterior Man page
log_posterior.brmsfit Man page Source code
log_sum_exp Source code
logit Source code
logit_scaled Man page Source code
loglik_acat Source code
loglik_asym_laplace Source code
loglik_bernoulli Source code
loglik_beta Source code
loglik_binomial Source code
loglik_categorical Source code
loglik_cauchy Source code
loglik_cauchy_cov Source code
loglik_cauchy_fixed Source code
loglik_cauchy_mv Source code
loglik_censor Source code
loglik_cratio Source code
loglik_cumulative Source code
loglik_exgaussian Source code
loglik_exponential Source code
loglik_frechet Source code
loglik_gamma Source code
loglik_gaussian Source code
loglik_gaussian_cov Source code
loglik_gaussian_fixed Source code
loglik_gaussian_mv Source code
loglik_gen_extreme_value Source code
loglik_geometric Source code
loglik_hurdle_continuous Source code
loglik_hurdle_discrete Source code
loglik_hurdle_gamma Source code
loglik_hurdle_lognormal Source code
loglik_hurdle_negbinomial Source code
loglik_hurdle_poisson Source code
loglik_inverse.gaussian Source code
loglik_lognormal Source code
loglik_mixture Source code
loglik_negbinomial Source code
loglik_poisson Source code
loglik_sratio Source code
loglik_student Source code
loglik_student_cov Source code
loglik_student_fixed Source code
loglik_student_mv Source code
loglik_truncate Source code
loglik_von_mises Source code
loglik_weibull Source code
loglik_weight Source code
loglik_wiener Source code
loglik_zero_inflated Source code
loglik_zero_inflated_beta Source code
loglik_zero_inflated_binomial Source code
loglik_zero_inflated_negbinomial Source code
loglik_zero_inflated_poisson Source code
loglik_zero_one_inflated_beta Source code
logm1 Man page Source code
lognormal Man page Source code
loo Man page
loo.brmsfit Man page Source code
loo_linpred Man page
loo_linpred.brmsfit Man page Source code
loo_predict Man page
loo_predict.brmsfit Man page Source code
loo_predictive_interval Man page
loo_predictive_interval.brmsfit Man page Source code
loo_weights Source code
lsp Source code
make_dims Source code
make_gp_list Source code
make_gp_list.brmsterms Source code
make_gp_list.btl Source code
make_gp_list.btnl Source code
make_index_names Source code
make_point_frame Source code
make_smooth_list Source code
make_smooth_list.brmsterms Source code
make_smooth_list.btl Source code
make_smooth_list.btnl Source code
make_stancode Man page Source code
make_standata Man page Source code
marginal_effects Man page Source code
marginal_effects.brmsfit Man page Source code
marginal_smooths Man page Source code
marginal_smooths.brmsfit Man page Source code
match_response Source code
matching_rows Source code
me Man page Source code
me_predictor Source code
melt_data Source code
message_new_method Source code
mid_terms Source code
mixture Man page Source code
mm Man page Source code
mo Man page Source code
mo_predictor Source code
model.frame.brmsfit Source code
mono Man page Source code
monotonic Man page Source code
mult_disp Source code
multiply_log Source code
name_model Source code
named_list Source code
neff_ratio Man page
neff_ratio.brmsfit Man page Source code
negbinomial Man page Source code
ngrps Man page Source code
ngrps.brmsfit Man page Man page Source code
nlist Source code
nobs.brmsfit Source code
nonlinear_predictor Source code
nsamples Man page Source code
nsamples.brmsfit Man page Source code
nuts_params Man page
nuts_params.brmsfit Man page Source code
old_VarCorr_brmsfit Source code
old_coef_brmsfit Source code
old_fixef_brmsfit Source code
old_ranef_brmsfit Source code
onAttach Source code
p Source code
pairs.brmsfit Man page Source code
par.names Man page
par.names.brmsfit Man page
par_family Source code
parnames Man page Source code
parnames.brmsfit Man page Source code
parnames.default Source code
parse_ad Source code
parse_bf Man page Source code
parse_cs Source code
parse_gp Source code
parse_lf Source code
parse_me Source code
parse_mo Source code
parse_nlf Source code
parse_offset Source code
parse_re Source code
parse_resp Source code
parse_sm Source code
parse_time Source code
paste_colon Source code
pasym_laplace Man page Source code
pcategorical Source code
pexgaussian Man page Source code
pfix Source code
pforms Source code
pfrechet Man page Source code
pgen_extreme_value Man page Source code
pinv_gaussian Man page Source code
plot.brmsMarginalEffects Man page Source code
plot.brmsfit Man page Source code
plot.brmshypothesis Man page Source code
plus_rhs Source code
pordinal Source code
posterior.samples Man page Source code
posterior.samples.brmsfit Man page
posterior_predict Man page
posterior_predict.brmsfit Man page Source code
posterior_samples Man page Source code
posterior_samples.brmsfit Man page Man page Source code
posterior_samples.default Source code
pow Source code
pp_check Man page
pp_check.brmsfit Man page Source code
pp_mixture Man page Source code
pp_mixture.brmsfit Man page Source code
predict.brmsfit Man page Source code
predict_acat Source code
predict_asym_laplace Source code
predict_bernoulli Source code
predict_beta Source code
predict_binomial Source code
predict_categorical Source code
predict_cauchy Source code
predict_cauchy_cov Source code
predict_cauchy_fixed Source code
predict_cauchy_mv Source code
predict_cratio Source code
predict_cumulative Source code
predict_exgaussian Source code
predict_exponential Source code
predict_frechet Source code
predict_gamma Source code
predict_gaussian Source code
predict_gaussian_cov Source code
predict_gaussian_fixed Source code
predict_gaussian_mv Source code
predict_gen_extreme_value Source code
predict_geometric Source code
predict_hurdle_gamma Source code
predict_hurdle_lognormal Source code
predict_hurdle_negbinomial Source code
predict_hurdle_poisson Source code
predict_inverse.gaussian Source code
predict_lognormal Source code
predict_mixture Source code
predict_negbinomial Source code
predict_ordinal Source code
predict_poisson Source code
predict_sratio Source code
predict_student Source code
predict_student_cov Source code
predict_student_fixed Source code
predict_student_mv Source code
predict_von_mises Source code
predict_weibull Source code
predict_wiener Source code
predict_zero_inflated_beta Source code
predict_zero_inflated_binomial Source code
predict_zero_inflated_negbinomial Source code
predict_zero_inflated_poisson Source code
predict_zero_one_inflated_beta Source code
predictive_error Man page
predictive_error.brmsfit Man page Source code
prepare_Z Source code
prepare_auxformula Source code
prepare_conditions Source code
prepare_family Source code
prepare_marg_data Source code
prepare_mo_vars Source code
print.brmsMarginalEffects Source code
print.brmsVarCorr Source code
print.brmsfamily Source code
print.brmsfit Man page Source code
print.brmsformula Source code
print.brmshypothesis Man page Source code
print.brmsmodel Source code
print.brmsprior Man page Source code
print.brmssummary Man page Source code
print.cor_arma Source code
print.cor_bsts Source code
print.cor_fixed Source code
print.cov_fixed Source code
print.ic Source code
print.iclist Source code
print.mixfamily Source code
print_prior Source code
prior Man page Source code
prior_ Man page Source code
prior_cs Source code
prior_effects Source code
prior_effects.btl Source code
prior_effects.btnl Source code
prior_fe Source code
prior_gp Source code
prior_me Source code
prior_mo Source code
prior_re Source code
prior_samples Man page Source code
prior_samples.brmsfit Man page Man page Source code
prior_samples.default Source code
prior_seval_args Source code
prior_sm Source code
prior_string Man page Source code
prior_summary Man page
prior_summary.brmsfit Man page Source code
pstudent_t Man page Source code
pvon_mises Man page Source code
qasym_laplace Man page Source code
qfrechet Man page Source code
qstudent_t Man page Source code
ranef Man page
ranef.brmsfit Man page Source code
rasym_laplace Man page Source code
re_predictor Source code
recreate_xi Source code
remove_autocor Source code
rename Source code
rename_pars Source code
reorder_obs Source code
reorder_pars Source code
residuals.brmsfit Man page Source code
resp_cat Man page Source code
resp_cens Man page Source code
resp_dec Man page Source code
resp_disp Man page Source code
resp_se Man page Source code
resp_se_no_data Source code
resp_trials Man page Source code
resp_trunc Man page Source code
resp_weights Man page Source code
restructure Man page Source code
rexgaussian Man page Source code
rfrechet Man page Source code
rgen_extreme_value Man page Source code
rhat Man page
rhat.brmsfit Man page Source code
rhs Source code
rhs_terms Source code
rinv_gaussian Man page Source code
rmMatch Source code
rmNULL Source code
rmNum Source code
rm_attr Source code
rm_int_fe Source code
rmulti_normal Man page Source code
rmulti_student_t Man page Source code
rng_continuous Source code
rng_discrete Source code
rng_mix Source code
rstudent_t Man page Source code
rsv_vars Source code
rvon_mises Man page Source code
rwiener Man page Source code
rwiener_num Source code
sargs Source code
scale_unit Source code
select_indices Source code
set_pointwise Source code
set_prior Man page Source code
softmax Source code
split_re_terms Source code
square Source code
sratio Man page Source code
stan_autocor Source code
stan_auxpar_defs Source code
stan_auxpar_defs_temp Source code
stan_base_prior Source code
stan_cens Source code
stan_cs Source code
stan_disp Source code
stan_effects Source code
stan_effects.brmsterms Source code
stan_effects.btl Source code
stan_effects.btnl Source code
stan_effects_mv Source code
stan_eta_bsts Source code
stan_eta_fe Source code
stan_eta_ilink Source code
stan_eta_mo Source code
stan_eta_r Source code
stan_eta_re Source code
stan_eta_sm Source code
stan_eta_transform Source code
stan_families Source code
stan_fe Source code
stan_gp Source code
stan_has_built_in_fun Source code
stan_ilink Source code
stan_link Source code
stan_llh Source code
stan_llh.default Source code
stan_llh.mixfamily Source code
stan_llh_adj Source code
stan_llh_auxpar_usc_logit Source code
stan_llh_cens Source code
stan_llh_general Source code
stan_llh_mix Source code
stan_llh_shape Source code
stan_llh_sigma Source code
stan_llh_trunc Source code
stan_llh_weights Source code
stan_me Source code
stan_misc_functions Source code
stan_mixture Source code
stan_mo Source code
stan_mv Source code
stan_needs_kronecker Source code
stan_ordinal Source code
stan_pred_functions Source code
stan_prior Source code
stan_re Source code
stan_rngprior Source code
stan_se Source code
stan_sm Source code
stancode Man page Source code
stancode.brmsfit Man page Source code
standata Man page Source code
standata.brmsfit Man page Source code
stanplot Man page Source code
stanplot.brmsfit Man page Source code
stop2 Source code
stop_not_cor_brms Source code
str2formula Source code
structure_not_null Source code
student Man page Source code
subset_attr Source code
subset_levels Source code
subset_samples Source code
summary.brmsfit Man page Source code
summary.family Source code
summary.mixfamily Source code
tidy_ranef Source code
ulapply Source code
update.brmsfit Man page Source code
update.brmsformula Source code
update_data Source code
update_re_terms Source code
usc Source code
use_alias Source code
use_cov Source code
use_int Source code
use_real Source code
valid_auxpars Source code
valid_auxpars.default Source code
valid_auxpars.mixfamily Source code
vcov.brmsfit Man page Source code
viridis6 Source code
von_mises Man page Source code
waic Man page
waic.brmsfit Man page Source code
warn_deprecated Source code
warning2 Source code
weibull Man page Source code
wiener Man page Source code
wsp Source code
zero_inflated_beta Man page Source code
zero_inflated_binomial Man page Source code
zero_inflated_negbinomial Man page Source code
zero_inflated_poisson Man page Source code
zero_one_inflated_beta Man page Source code

Files

inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/brms_phylogenetics.html
inst/doc/brms_distreg.Rmd
inst/doc/brms_nonlinear.R
inst/doc/brms_monotonic.Rmd
inst/doc/brms_phylogenetics.Rmd
inst/doc/brms_overview.ltx
inst/doc/brms_monotonic.html
inst/doc/brms_families.Rmd
inst/doc/brms_phylogenetics.R
inst/doc/brms_monotonic.R
inst/doc/brms_multilevel.pdf
inst/doc/brms_families.html
inst/doc/brms_nonlinear.html
inst/doc/brms_overview.pdf
inst/doc/brms_multilevel.ltx
inst/doc/brms_distreg.R
inst/doc/brms_distreg.html
inst/doc/brms_nonlinear.Rmd
inst/chunks
inst/chunks/fun_cauchit.stan
inst/chunks/fun_hurdle_lognormal.stan
inst/chunks/fun_asym_laplace.stan
inst/chunks/fun_cloglog.stan
inst/chunks/data_arma.stan
inst/chunks/fun_zero_one_inflated_beta.stan
inst/chunks/fun_cov_matrix_ar1.stan
inst/chunks/fun_horseshoe.stan
inst/chunks/tdataD_inv_gaussian.stan
inst/chunks/fun_scale_xi.stan
inst/chunks/fun_logm1.stan
inst/chunks/fun_zero_inflated_beta.stan
inst/chunks/fun_zero_inflated_binomial.stan
inst/chunks/fun_zero_inflated_poisson.stan
inst/chunks/data_mv.stan
inst/chunks/fun_monotonic.stan
inst/chunks/fun_kronecker.stan
inst/chunks/fun_gen_extreme_value.stan
inst/chunks/fun_normal_cov.stan
inst/chunks/fun_von_mises.stan
inst/chunks/fun_student_t_cov.stan
inst/chunks/fun_inv_gaussian.stan
inst/chunks/fun_cov_matrix_ma1.stan
inst/chunks/fun_hurdle_negbinomial.stan
inst/chunks/data_arma_cov.stan
inst/chunks/fun_hurdle_poisson.stan
inst/chunks/fun_tan_half.stan
inst/chunks/fun_hurdle_gamma.stan
inst/chunks/fun_wiener_diffusion.stan
inst/chunks/fun_gaussian_process.stan
inst/chunks/fun_cov_matrix_arma1.stan
inst/chunks/fun_zero_inflated_negbinomial.stan
inst/chunks/fun_as_matrix.stan
inst/chunks/tdataC_inv_gaussian.stan
tests
tests/testthat.R
tests/testthat
tests/testthat/tests.stan_functions.R
tests/testthat/tests.rename.R
tests/testthat/tests.make_standata.R
tests/testthat/tests.misc.R
tests/testthat/tests.predict.R
tests/testthat/tests.brm.R
tests/testthat/tests.brmsfit-methods.R
tests/testthat/tests.validate.R
tests/testthat/tests.brmsformula.R
tests/testthat/tests.families.R
tests/testthat/tests.fitted.R
tests/testthat/tests.data-helpers.R
tests/testthat/tests.loglik.R
tests/testthat/tests.priors.R
tests/testthat/tests.brmsfit-helpers.R
tests/testthat/tests.make_stancode.R
tests/testthat/tests.distributions.R
tests/testthat/tests.plots.R
NAMESPACE
data
data/epilepsy.rda
data/inhaler.rda
data/kidney.rda
R
R/misc-methods.R
R/extract_draws.R
R/brmsfit-methods.R
R/stan-likelihood.R
R/correlations.R
R/stan-predictor.R
R/linear_predictor.R
R/make_stancode.R
R/priors.R
R/brmsformula.R
R/stan-helpers.R
R/predict.R
R/sysdata.rda
R/families.R
R/generics.R
R/fitted.R
R/brmsfit-helpers.R
R/loglik.R
R/plots.R
R/distributions.R
R/brm.R
R/make_standata.R
R/data-helpers.R
R/deprecated-methods.R
R/rename.R
R/data-predictor.R
R/formula-helpers.R
R/lsp.R
R/misc.R
R/validate.R
R/datasets.R
R/zzz.R
vignettes
vignettes/brms_distreg.Rmd
vignettes/inhaler_plot.pdf
vignettes/brms_monotonic.Rmd
vignettes/kidney_marginal_effects.pdf
vignettes/ppc_mm1.pdf
vignettes/brms_phylogenetics.Rmd
vignettes/brms_overview.ltx
vignettes/brms_families.Rmd
vignettes/me_loss1.pdf
vignettes/brms_multilevel.ltx
vignettes/flowchart.pdf
vignettes/children
vignettes/children/SETTINGS-knitr.txt
vignettes/me_loss3_year.pdf
vignettes/me_loss1_year.pdf
vignettes/me_zinb1.pdf
vignettes/kidney_plot.pdf
vignettes/brms_nonlinear.Rmd
vignettes/citations.bib
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/nsamples.Rd
man/control_params.Rd
man/plot.brmsfit.Rd
man/me.Rd
man/cs.Rd
man/gp.Rd
man/MultiStudentT.Rd
man/mixture.Rd
man/ExGaussian.Rd
man/is.brmsformula.Rd
man/diagnostic-quantities.Rd
man/ngrps.Rd
man/LOO.Rd
man/set_prior.Rd
man/Wiener.Rd
man/marginal_effects.Rd
man/make_standata.Rd
man/cor_fixed.Rd
man/StudentT.Rd
man/expose_functions.Rd
man/is.brmsterms.Rd
man/summary.brmsfit.Rd
man/brmsfamily.Rd
man/update.brmsfit.Rd
man/InvGaussian.Rd
man/fixef.brmsfit.Rd
man/VonMises.Rd
man/is.cor_brms.Rd
man/AsymLaplace.Rd
man/brmsformula.Rd
man/parnames.Rd
man/is.brmsfit.Rd
man/stancode.Rd
man/is.brmsprior.Rd
man/epilepsy.Rd
man/inv_logit_scaled.Rd
man/compare_ic.Rd
man/brm.Rd
man/lasso.Rd
man/prior_samples.Rd
man/pp_check.brmsfit.Rd
man/cor_bsts.Rd
man/hypothesis.Rd
man/as.mcmc.brmsfit.Rd
man/vcov.brmsfit.Rd
man/coef.brmsfit.Rd
man/cor_brms.Rd
man/brmshypothesis.Rd
man/predict.brmsfit.Rd
man/WAIC.Rd
man/launch_shiny.Rd
man/VarCorr.brmsfit.Rd
man/MultiNormal.Rd
man/ranef.brmsfit.Rd
man/stanplot.Rd
man/mo.Rd
man/cor_ar.Rd
man/print.brmsfit.Rd
man/marginal_smooths.Rd
man/prior_summary.brmsfit.Rd
man/cor_ma.Rd
man/print.brmsprior.Rd
man/brms-package.Rd
man/log_lik.brmsfit.Rd
man/logm1.Rd
man/gr.Rd
man/kidney.Rd
man/restructure.Rd
man/make_stancode.Rd
man/cor_arma.Rd
man/mm.Rd
man/brmsfit-class.Rd
man/pairs.brmsfit.Rd
man/logit_scaled.Rd
man/standata.Rd
man/addition-terms.Rd
man/expp1.Rd
man/inhaler.Rd
man/Frechet.Rd
man/horseshoe.Rd
man/pp_mixture.Rd
man/cor_arr.Rd
man/fitted.brmsfit.Rd
man/residuals.brmsfit.Rd
man/get_prior.Rd
man/add_ic.Rd
man/GenExtremeValue.Rd
man/parse_bf.Rd
man/loo_predict.brmsfit.Rd
man/posterior_samples.Rd
brms documentation built on May 24, 2017, 1:04 a.m.

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