brms: Bayesian Regression Models using Stan

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Fit Bayesian generalized (non-)linear multilevel models using Stan for full Bayesian inference.

Author
Paul-Christian Buerkner [aut, cre]
Date of publication
2016-12-06 11:28:18
Maintainer
Paul-Christian Buerkner <paul.buerkner@gmail.com>
License
GPL (>= 3)
Version
1.2.0
URLs

View on CRAN

Man pages

as.mcmc.brmsfit
Extract posterior samples for use with the 'coda' package
brm
Fit Bayesian Generalized (Non-)Linear Multilevel Models
brmsfamily
Special Family Functions for 'brms' Models
brmsfit-class
Class 'brmsfit' of models fitted with the 'brms' package
brmsformula
Set up a model formula for use in the 'brms' package
brms-package
Bayesian Regression Models using Stan
coef.brmsfit
Extract model coefficients
cor_ar
AR(p) correlation structure
cor_arma
ARMA(p,q) correlation structure
cor_arr
ARR(r) correlation structure
cor_brms
Correlation structure classes for the 'brms' package
cor_bsts
Basic Bayesian Structural Time Series
cor_ma
MA(q) correlation structure
cov_fixed
Fixed user-defined covariance matrices
epilepsy
Epileptic seizure counts
expose_functions
Expose user-defined 'Stan' functions
fitted.brmsfit
Extract Model Fitted Values of 'brmsfit' Objects
fixef.brmsfit
Extract Population-Level Estimates
get_prior
Overview on Priors for 'brms' Models
hypothesis
Non-linear hypothesis testing
inhaler
Clarity of inhaler instructions
kidney
Infections in kidney patients
launch_shiny
Interface to 'shinystan'
log_lik.brmsfit
Compute the Pointwise Log-Likelihood
LOO
Compute the LOO information criterion
make_stancode
Stan Code for 'brms' Models
make_standata
Data for 'brms' Models
marginal_effects
Display marginal effects of predictors
marginal_smooths
Display Smooth Terms
ngrps.brmsfit
Number of levels
pairs.brmsfit
Create a matrix of output plots from a 'brmsfit' object
parnames
Extract Parameter Names
plot.brmsfit
Trace and Density Plots for MCMC Samples
posterior_samples
Extract posterior samples
pp_check.brmsfit
Posterior Predictive Checks for 'brmsfit' Objects
predict.brmsfit
Model Predictions of 'brmsfit' Objects
print.brmsfit
Print a summary for a fitted model represented by a 'brmsfit'...
print.brmsprior
Print method for 'brmsprior' objects
prior_samples
Extract prior samples
prior_summary.brmsfit
Extract Priors of a Bayesian Model Fitted with 'brms'
ranef.brmsfit
Extract Group-Level Estimates
residuals.brmsfit
Extract Model Residuals from brmsfit Objects
set_prior
Prior Definitions for 'brms' Models
stancode
Extract Stan Model Code
standata
Extract Data passed to Stan
stanplot
Various Plotting Functions implemented in 'rstan'
summary.brmsfit
Create a summary of a fitted model represented by a 'brmsfit'...
update.brmsfit
Update 'brms' models
VarCorr.brmsfit
Extract variance and correlation components
vcov.brmsfit
Covariance and Correlation Matrix of Population-Level Effects
WAIC
Compute the WAIC

Files in this package

brms
brms/inst
brms/inst/CITATION
brms/inst/NEWS.Rd
brms/inst/doc
brms/inst/doc/brms_phylogenetics.html
brms/inst/doc/brms_distreg.Rmd
brms/inst/doc/brms_nonlinear.R
brms/inst/doc/brms_monotonic.Rmd
brms/inst/doc/brms_phylogenetics.Rmd
brms/inst/doc/brms.pdf
brms/inst/doc/brms_monotonic.html
brms/inst/doc/brms_families.Rmd
brms/inst/doc/brms_phylogenetics.R
brms/inst/doc/brms_monotonic.R
brms/inst/doc/brms.ltx
brms/inst/doc/brms_families.html
brms/inst/doc/brms_nonlinear.html
brms/inst/doc/brms_distreg.R
brms/inst/doc/brms_distreg.html
brms/inst/doc/brms_nonlinear.Rmd
brms/inst/chunks
brms/inst/chunks/fun_cauchit.stan
brms/inst/chunks/fun_hurdle_lognormal.stan
brms/inst/chunks/fun_cloglog.stan
brms/inst/chunks/data_arma.stan
brms/inst/chunks/fun_cov_matrix_ar1.stan
brms/inst/chunks/tdataD_inv_gaussian.stan
brms/inst/chunks/fun_zero_inflated_beta.stan
brms/inst/chunks/fun_zero_inflated_binomial.stan
brms/inst/chunks/fun_zero_inflated_poisson.stan
brms/inst/chunks/data_mv.stan
brms/inst/chunks/fun_monotonic.stan
brms/inst/chunks/fun_kronecker.stan
brms/inst/chunks/fun_normal_cov.stan
brms/inst/chunks/tdataD_sparse_X.stan
brms/inst/chunks/fun_von_mises.stan
brms/inst/chunks/fun_student_t_cov.stan
brms/inst/chunks/fun_inv_gaussian.stan
brms/inst/chunks/fun_cov_matrix_ma1.stan
brms/inst/chunks/fun_hurdle_negbinomial.stan
brms/inst/chunks/data_arma_cov.stan
brms/inst/chunks/fun_hurdle_poisson.stan
brms/inst/chunks/fun_tan_half.stan
brms/inst/chunks/fun_hurdle_gamma.stan
brms/inst/chunks/tdataC_sparse_X.stan
brms/inst/chunks/fun_cov_matrix_arma1.stan
brms/inst/chunks/fun_zero_inflated_negbinomial.stan
brms/inst/chunks/fun_as_matrix.stan
brms/inst/chunks/tdataC_inv_gaussian.stan
brms/tests
brms/tests/testthat.R
brms/tests/testthat
brms/tests/testthat/tests.stan_functions.R
brms/tests/testthat/tests.rename.R
brms/tests/testthat/tests.make_standata.R
brms/tests/testthat/tests.misc.R
brms/tests/testthat/tests.predict.R
brms/tests/testthat/tests.brm.R
brms/tests/testthat/tests.brmsfit-methods.R
brms/tests/testthat/tests.validate.R
brms/tests/testthat/tests.brmsformula.R
brms/tests/testthat/tests.families.R
brms/tests/testthat/tests.fitted.R
brms/tests/testthat/tests.data-helpers.R
brms/tests/testthat/tests.loglik.R
brms/tests/testthat/tests.priors.R
brms/tests/testthat/tests.brmsfit-helpers.R
brms/tests/testthat/tests.make_stancode.R
brms/tests/testthat/tests.stan-helpers.R
brms/tests/testthat/tests.distributions.R
brms/tests/testthat/tests.plots.R
brms/NAMESPACE
brms/data
brms/data/epilepsy.rda
brms/data/inhaler.rda
brms/data/kidney.rda
brms/R
brms/R/misc-methods.R
brms/R/extract_draws.R
brms/R/brmsfit-methods.R
brms/R/correlations.R
brms/R/stan-predictor.R
brms/R/linear_predictor.R
brms/R/make_stancode.R
brms/R/priors.R
brms/R/brmsformula.R
brms/R/stan-helpers.R
brms/R/predict.R
brms/R/sysdata.rda
brms/R/families.R
brms/R/generics.R
brms/R/fitted.R
brms/R/brmsfit-helpers.R
brms/R/loglik.R
brms/R/plots.R
brms/R/distributions.R
brms/R/brm.R
brms/R/make_standata.R
brms/R/data-helpers.R
brms/R/rename.R
brms/R/lsp.R
brms/R/misc.R
brms/R/validate.R
brms/R/datasets.R
brms/R/zzz.R
brms/vignettes
brms/vignettes/brms_distreg.Rmd
brms/vignettes/inhaler_plot.pdf
brms/vignettes/brms_monotonic.Rmd
brms/vignettes/kidney_marginal_effects.pdf
brms/vignettes/brms_phylogenetics.Rmd
brms/vignettes/brms_families.Rmd
brms/vignettes/brms.ltx
brms/vignettes/flowchart.pdf
brms/vignettes/kidney_plot.pdf
brms/vignettes/brms_nonlinear.Rmd
brms/vignettes/citations.bib
brms/README.md
brms/MD5
brms/build
brms/build/vignette.rds
brms/DESCRIPTION
brms/man
brms/man/plot.brmsfit.Rd
brms/man/LOO.Rd
brms/man/set_prior.Rd
brms/man/marginal_effects.Rd
brms/man/make_standata.Rd
brms/man/expose_functions.Rd
brms/man/summary.brmsfit.Rd
brms/man/brmsfamily.Rd
brms/man/update.brmsfit.Rd
brms/man/fixef.brmsfit.Rd
brms/man/brmsformula.Rd
brms/man/parnames.Rd
brms/man/cov_fixed.Rd
brms/man/stancode.Rd
brms/man/epilepsy.Rd
brms/man/brm.Rd
brms/man/prior_samples.Rd
brms/man/pp_check.brmsfit.Rd
brms/man/cor_bsts.Rd
brms/man/hypothesis.Rd
brms/man/as.mcmc.brmsfit.Rd
brms/man/vcov.brmsfit.Rd
brms/man/coef.brmsfit.Rd
brms/man/cor_brms.Rd
brms/man/predict.brmsfit.Rd
brms/man/WAIC.Rd
brms/man/launch_shiny.Rd
brms/man/VarCorr.brmsfit.Rd
brms/man/ranef.brmsfit.Rd
brms/man/stanplot.Rd
brms/man/ngrps.brmsfit.Rd
brms/man/cor_ar.Rd
brms/man/print.brmsfit.Rd
brms/man/marginal_smooths.Rd
brms/man/prior_summary.brmsfit.Rd
brms/man/cor_ma.Rd
brms/man/print.brmsprior.Rd
brms/man/brms-package.Rd
brms/man/log_lik.brmsfit.Rd
brms/man/kidney.Rd
brms/man/make_stancode.Rd
brms/man/cor_arma.Rd
brms/man/brmsfit-class.Rd
brms/man/pairs.brmsfit.Rd
brms/man/standata.Rd
brms/man/inhaler.Rd
brms/man/cor_arr.Rd
brms/man/fitted.brmsfit.Rd
brms/man/residuals.brmsfit.Rd
brms/man/get_prior.Rd
brms/man/posterior_samples.Rd