API for bulkAnalyseR
Interactive Shiny App for Bulk Sequencing Data
| Global functions | |
|---|---|
| %>% | Man page |
| DEanalysis | Man page |
| DEanalysis_deseq2 | Man page Source code |
| DEanalysis_edger | Man page Source code |
| DEpanel | Man page |
| DEpanelApp | Source code |
| DEpanelServer | Man page Source code |
| DEpanelUI | Man page Source code |
| DEplotPanel | Man page |
| DEplotPanelApp | Source code |
| DEplotPanelServer | Man page Source code |
| DEplotPanelUI | Man page Source code |
| DEsummaryPanel | Man page |
| DEsummaryPanelApp | Source code |
| DEsummaryPanelServer | Man page Source code |
| DEsummaryPanelUI | Man page Source code |
| GRNCisPanel | Man page |
| GRNCisPanelServer | Man page Source code |
| GRNCisPanelUI | Man page Source code |
| GRNCustomPanel | Man page |
| GRNCustomPanelServer | Man page Source code |
| GRNCustomPanelUI | Man page Source code |
| GRNTransPanel | Man page |
| GRNTransPanelServer | Man page Source code |
| GRNTransPanelUI | Man page Source code |
| GRNpanel | Man page |
| GRNpanelServer | Man page Source code |
| GRNpanelUI | Man page Source code |
| QCpanel | Man page |
| QCpanelServer | Man page Source code |
| QCpanelUI | Man page Source code |
| calculate_condition_mean_sd_per_gene | Man page Source code |
| crossPanel | Man page |
| crossPanelServer | Man page Source code |
| crossPanelUI | Man page Source code |
| cross_plot | Man page Source code |
| cross_plot_prep | Source code |
| determine_uds | Man page Source code |
| enrichmentPanel | Man page |
| enrichmentPanelServer | Man page Source code |
| enrichmentPanelUI | Man page Source code |
| expression_heatmap | Man page Source code |
| find_regulators_with_recurring_edges | Man page Source code |
| generateAppFile | Source code |
| generateDataFiles | Source code |
| generateIntegrationDataFiles | Source code |
| generateShinyApp | Man page Source code |
| genes_barplot | Man page Source code |
| get_link_list_rename | Man page Source code |
| infer_GRN | Man page Source code |
| jaccard_heatmap | Man page Source code |
| jaccard_index | Man page Source code |
| landingPanel | Man page |
| landingPanelServer | Man page Source code |
| landingPanelUI | Man page Source code |
| ma_enhance | Man page Source code |
| ma_plot | Man page Source code |
| make_heatmap_matrix | Man page Source code |
| make_pattern_matrix | Man page Source code |
| modalityPanel | Man page |
| modalityPanelServer | Man page Source code |
| modalityPanelUI | Man page Source code |
| noisyr_counts_with_plot | Man page Source code |
| patternPanel | Man page |
| patternPanelServer | Man page Source code |
| patternPanelUI | Man page Source code |
| plot_GRN | Man page Source code |
| plot_line_pattern | Man page Source code |
| plot_pca | Man page Source code |
| plot_upset | Man page Source code |
| preprocessExpressionMatrix | Man page Source code |
| preprocess_miRTarBase | Man page Source code |
| qc_density_plot | Man page Source code |
| qc_ma_plot | Source code |
| qc_violin_plot | Man page Source code |
| rescale_matrix | Man page Source code |
| sampleSelectPanel | Man page |
| sampleSelectPanelApp | Source code |
| sampleSelectPanelServer | Man page Source code |
| sampleSelectPanelUI | Man page Source code |
| scatter_plot | Man page Source code |
| validateAppInputs | Source code |
| validateIntegrationInputs | Source code |
| volcano_enhance | Man page Source code |
| volcano_plot | Man page Source code |
