GRNCisPanel | R Documentation |
These are the UI and server components of the GRN cis integration
panel of the shiny app. It is generated by including at least 1 row in the
cis.integration parameter of generateShinyApp
.
GRNCisPanelUI(id, reference.table.name, comparison.table.name) GRNCisPanelServer( id, expression.matrix, anno, coord.table.reference, coord.table.comparison, seed = 13 )
id |
the input slot that will be used to access the value |
reference.table.name |
Name for reference expression matrix and coordinate table |
comparison.table.name |
Name for comparison coordinate table |
expression.matrix |
the expression matrix; rows correspond to genes and
columns correspond to samples; usually preprocessed by
|
anno |
annotation data frame containing a match between the row names
of the expression.matrix (usually ENSEMBL IDs) and the gene names that
should be rendered within the app and in output files; this object is
created by |
coord.table.reference |
Table of coordinates corresponding to rows of expression.matrix |
coord.table.comparison |
Table of coordinates to compare against coord.table.reference |
seed |
Random seed to create reproducible GRNs |
The UI and Server components of the shiny module, that can be used within the UI and Server definitions of a shiny app.
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