find_regulators_with_recurring_edges: Find recurring regulators

In bulkAnalyseR: Interactive Shiny App for Bulk Sequencing Data

Find recurring regulators

Description

This function finds regulators that appear as the same network edge in more than one of the input networks.

Usage

find_regulators_with_recurring_edges(weightMatList, plotConnections)

Arguments

weightMatList	a list of (weighted) adjacency matrices; each list element must be an adjacency matrix with regulators in rows, targets in columns
plotConnections	the number of connections to subset to

Value

A vector containing the names of the recurring regulators

Examples

weightMat1 <- matrix(
  c(0.1, 0.4, 0.8, 0.3), nrow = 2, ncol = 2,
  dimnames = list("regulators" = c("r1", "r2"), "targets" = c("t1", "t2"))
)
weightMat2 <- matrix(
  c(0.1, 0.2, 0.8, 0.3), nrow = 2, ncol = 2,
  dimnames = list("regulators" = c("r1", "r2"), "targets" = c("t1", "t2"))
)
find_regulators_with_recurring_edges(list(weightMat1, weightMat2), 2)

bulkAnalyseR documentation built on Dec. 28, 2022, 2:04 a.m.