sampleSelectPanel: Generate the sample select panel of the shiny app

In bulkAnalyseR: Interactive Shiny App for Bulk Sequencing Data

Generate the sample select panel of the shiny app

Description

These are the UI and server components of the sample selection panel of the shiny app. It is generated by including 'SampleSelect' in the panels.default argument of generateShinyApp.

Usage

sampleSelectPanelUI(id, metadata, show = TRUE)

sampleSelectPanelServer(id, expression.matrix, metadata, modality = "RNA")

Arguments

id	the input slot that will be used to access the value
metadata	a data frame containing metadata for the samples contained in the expression.matrix; must contain at minimum two columns: the first column must contain the column names of the expression.matrix, while the last column is assumed to contain the experimental conditions that will be tested for differential expression; a list (of the same length as modality) can be provided if #' length(modality) > 1
show	whether to show the panel or not; default is TRUE; there for compatibility with specifying panels to show
expression.matrix	the expression matrix; rows correspond to genes and columns correspond to samples; usually preprocessed by preprocessExpressionMatrix; a list (of the same length as modality) can be provided if #' length(modality) > 1
modality	the modality, needs to be passed when used within another shiny module for namespacing reasons

Value

The UI and Server components of the shiny module, that can be used within the UI and Server definitions of a shiny app.

bulkAnalyseR documentation built on Dec. 28, 2022, 2:04 a.m.