plot_upset: Visualise the overlap of edges between different networks

In bulkAnalyseR: Interactive Shiny App for Bulk Sequencing Data

Visualise the overlap of edges between different networks

Description

This function creates an UpSet plot of the intersections and specific differences of the edges in the input networks.

Usage

plot_upset(weightMatList, plotConnections)

Arguments

weightMatList	a list of (weighted) adjacency matrices; each list element must be an adjacency matrix with regulators in rows, targets in columns
plotConnections	the number of connections to subset to

Value

An UpSet plot. See UpSetR package for more details.

Examples

weightMat1 <- matrix(
  c(0.1, 0.4, 0.8, 0.3), nrow = 2, ncol = 2,
  dimnames = list("regulators" = c("r1", "r2"), "targets" = c("t1", "t2"))
)
weightMat2 <- matrix(
  c(0.1, 0.2, 0.8, 0.3), nrow = 2, ncol = 2,
  dimnames = list("regulators" = c("r1", "r2"), "targets" = c("t1", "t2"))
)
plot_upset(list(weightMat1, weightMat2), 2)

bulkAnalyseR documentation built on Dec. 28, 2022, 2:04 a.m.