GRNCustomPanel | R Documentation |
These are the UI and server components of the GRN custom integration
panel of the shiny app. It is generated by including at least 1 row in the
custom.integration parameter of generateShinyApp
.
GRNCustomPanelUI(id, title = "GRN with custom integration", show = TRUE) GRNCustomPanelServer( id, expression.matrix, anno, comparison.table, DEresults = NULL, seed = 13 )
id |
the input slot that will be used to access the value |
title |
Name for custom panel instance |
show |
whether to show the panel or not; default is TRUE; there for compatibility with specifying panels to show |
expression.matrix |
the expression matrix; rows correspond to genes and
columns correspond to samples; usually preprocessed by
|
anno |
annotation data frame containing a match between the row names
of the expression.matrix (usually ENSEMBL IDs) and the gene names that
should be rendered within the app and in output files; this object is
created by |
comparison.table |
Table linking rows of expression.matrix to custom information, for example miRNAs or transcription factors. |
DEresults |
differential expression results output from DEpanelServer; a reactive list with slots 'DEtable' (all genes), 'DEtableSubset' (only DE genes), 'lfcThreshold' and 'pvalThreshold' |
seed |
Random seed to create reproducible GRNs |
The UI and Server components of the shiny module, that can be used within the UI and Server definitions of a shiny app.
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