Nothing
library(testthat)
context("Test that simulations with weird cases work as expected")
seed <- 1
source(paste0("", "testUtils.R"))
test_that(getTestName("Simulate a bolus without observation"), {
model <- model_suite$testing$nonmem$advan4_trans4
dataset <- Dataset() %>%
add(Bolus(time=0, amount=1000))
simulation <- expression()
test <- expression(
expect_error(simulate(model=model, dataset=dataset, dest=destEngine, seed=seed),
regexp="Dataset does not contain any observation")
)
campsisTest(simulation, test, env=environment())
})
test_that(getTestName("Simulate a bolus with single observation at time 0"), {
model <- model_suite$testing$nonmem$advan4_trans4
dataset <- Dataset() %>%
add(Bolus(time=0, amount=1000)) %>%
add(Observations(time=0))
simulation <- expression(simulate(model=model, dataset=dataset, dest=destEngine, seed=seed))
test <- expression(
expect_equal(nrow(results), 1),
expect_equal(results[c("ID", "TIME", "CP")], tibble::tibble(ID=1, TIME=0, CP=0))
)
campsisTest(simulation, test, env=environment())
})
test_that(getTestName("Simulate a model which is not valid"), {
model <- model_suite$testing$nonmem$advan4_trans4
# Corrupt name slot of parameter KA
model@parameters@list[[1]]@name <- c("KA", "KA2")
dataset <- Dataset() %>%
add(Bolus(time=0, amount=1000)) %>%
add(Observations(time=0))
simulation <- expression()
test <- expression(
expect_error(simulate(model=model, dataset=dataset, dest=destEngine, seed=seed),
regexp="name is length 2. Should be 1.")
)
campsisTest(simulation, test, env=environment())
})
test_that(getTestName("Simulate a dataset which is not valid"), {
model <- model_suite$testing$nonmem$advan4_trans4
dataset <- Dataset() %>%
add(Bolus(time=0, amount=1000)) %>%
add(Observations(time=0))
# Corrupt amount slot of first bolus
dataset@arms@list[[1]]@protocol@treatment@list[[1]]@amount <- c(1000,1000)
simulation <- expression()
test <- expression(
expect_error(simulate(model=model, dataset=dataset, dest=destEngine, seed=seed),
regexp="amount is length 2. Should be 1.")
)
campsisTest(simulation, test, env=environment())
})
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.