Files in campsismod
Generic Implementation of a PK/PD Model
MD5
NEWS.md
README.md
LICENSE.note
NAMESPACE
DESCRIPTION
R/generic_list.R
R/compartment_lag_time.R
R/mrgsolve_model.R
R/compartment_infusion_duration.R
R/pattern.R
R/model_unknown_statement.R
R/check.R
R/model_add_suffix.R
R/utilities.R
R/omega_block.R
R/replication_settings.R
R/compartment.R
R/parameter.R
R/json_interface.R
R/parameters.R
R/model_comment.R
R/data.R
R/model_statement.R
R/replicated_campsis_model.R
R/compartment_property.R
R/generic.R
R/campsis_model.R
R/model_if_statement.R
R/rxode_conversion.R
R/model_statements.R
R/code_record.R
R/mrgsolve_conversion.R
R/generic_element_list.R
R/model_equation.R
R/global.R
R/deprecated_methods.R
R/model_parser.R
R/compartment_bioavailability.R
R/compartment_properties.R
R/generic_element_position.R
R/json_element.R
R/special_operators.R
R/omega_blocks.R
R/compartment_initial_condition.R
R/model_ode.R
R/parameter_uncertainty_utils.R
R/code_records.R
R/compartments.R
R/rxode_model.R
R/model_line_break.R
R/compartment_infusion_rate.R
inst/doc/v03_model_adaptation.Rmd
inst/doc/v03_model_adaptation.html
inst/doc/campsismod.Rmd
inst/doc/v03_model_adaptation.R
inst/doc/v06_append_pd_model.R
inst/doc/v01_model_creation.html
inst/doc/v05_parameters.html
inst/doc/v02_structural_model.Rmd
inst/doc/v02_structural_model.R
inst/doc/v01_model_creation.Rmd
inst/doc/campsismod.R
inst/doc/v04_compartment_properties.R
inst/doc/v04_compartment_properties.Rmd
inst/doc/campsismod.html
inst/doc/v05_parameters.R
inst/doc/v06_append_pd_model.Rmd
inst/doc/v02_structural_model.html
inst/doc/v01_model_creation.R
inst/doc/v04_compartment_properties.html
inst/doc/v05_parameters.Rmd
inst/doc/v06_append_pd_model.html
inst/extdata/campsismod.schema.json
build/vignette.rds
tests/testthat.R
tests/testthat/test-parameters.R
tests/testthat/test-model_library.R
tests/testthat/test-generic_list.R
tests/testthat/test-utils.R
tests/testthat/test-compartments.R
tests/testthat/test-miscellaneous.R
tests/testthat/test-mrgsolve_conversion.R
tests/testthat/test-show_uncertainty.R
tests/testthat/test-auto_detect_nonmem.R
tests/testthat/test-json_interface.R
tests/testthat/test-utilities.R
tests/testthat/test-simulation_time_conversion.R
tests/testthat/test-code_records.R
tests/testthat/test-add_suffix.R
tests/testthat/test-record_delimiters.R
tests/testthat/test-model_parser.R
tests/testthat/test-rxode_conversion.R
tests/testthat/test-read_write.R
tests/testthat/test-pattern.R
tests/testthat/test-parameter.R
tests/testthat/test-warnings.R
tests/testthat/test-nonmem_conversion.R
tests/testthat/test-campsis_model.R
tests/testthat/test-replicated_campsis_model.R
tests/testthat/custom/malformed_record_delimiter1/model.campsis
tests/testthat/custom/malformed_record_delimiter2/model.campsis
tests/testthat/custom/csv_locale_french/model.campsis
tests/testthat/custom/csv_locale_french/omega.csv
tests/testthat/custom/csv_locale_french/theta.csv
tests/testthat/custom/csv_locale_french/sigma.csv
tests/testthat/custom/line_breaks_before_main/model.campsis
tests/testthat/custom/model1_omega_fixed/model.campsis
tests/testthat/custom/model1_omega_fixed/omega.csv
tests/testthat/custom/model1_omega_fixed/theta.csv
tests/testthat/custom/model1_omega_fixed/sigma.csv
tests/testthat/custom/non_standard_record_delimiters/model.campsis
tests/testthat/custom/no_record_delimiter_available2/model.campsis
tests/testthat/custom/comments_before_main/model.campsis
tests/testthat/custom/model_suffix_ab/model.campsis
tests/testthat/custom/model_suffix_ab/omega.csv
tests/testthat/custom/model_suffix_ab/theta.csv
tests/testthat/custom/model_suffix_ab/sigma.csv
tests/testthat/custom/record_delimiters_with_comment/model.campsis
tests/testthat/custom/no_record_delimiter_available1/model.campsis
tests/testthat/custom/unknow_record_delimiters/model.campsis
tests/testthat/custom/unknown_statement_hello/model.campsis
tests/testthat/custom/unknown_statement_illegal_variable_name/model.campsis
tests/testthat/custom/ode_in_non_ode_record/model.campsis
tests/testthat/custom/incomplete_final_line/model.campsis
tests/testthat/custom/incomplete_final_line/omega.csv
tests/testthat/custom/incomplete_final_line/theta.csv
tests/testthat/custom/incomplete_final_line/sigma.csv
tests/testthat/custom/if_in_properties_record/model.campsis
tests/testthat/custom/advan1_trans1_no_name/model.campsis
tests/testthat/custom/advan1_trans1_no_name/omega.csv
tests/testthat/custom/advan1_trans1_no_name/theta.csv
tests/testthat/custom/advan1_trans1_no_name/sigma.csv
tests/testthat/write/models/my_model1/model.campsis
tests/testthat/write/models/my_model1/varcov.csv
tests/testthat/write/models/my_model1/omega.csv
tests/testthat/write/models/my_model1/theta.csv
tests/testthat/write/models/my_model1/sigma.csv
tests/testthat/write/models/advan4_trans4/model.campsis
tests/testthat/write/models/advan4_trans4/omega.csv
tests/testthat/write/models/advan4_trans4/theta.csv
tests/testthat/write/models/advan4_trans4/sigma.csv
tests/testthat/write/models/advan1_trans1/model.campsis
tests/testthat/write/models/advan1_trans1/omega.csv
tests/testthat/write/models/advan1_trans1/theta.csv
tests/testthat/write/models/advan1_trans1/sigma.csv
tests/testthat/write/models/model_1cpt_fo_annotated/model.campsis
tests/testthat/write/models/model_1cpt_fo_annotated/omega.csv
tests/testthat/write/models/model_1cpt_fo_annotated/theta.csv
tests/testthat/write/models/model_1cpt_fo_annotated/sigma.csv
tests/testthat/write/models/model_1cpt_fo_min_max/model.campsis
tests/testthat/write/models/model_1cpt_fo_min_max/omega.csv
tests/testthat/write/models/model_1cpt_fo_min_max/theta.csv
tests/testthat/write/models/model_1cpt_fo_min_max/sigma.csv
tests/testthat/write/parameters/omega.csv
tests/testthat/write/parameters/theta.csv
tests/testthat/write/parameters/sigma.csv
tests/testthat/write/records/records1.mod
tests/testthat/json_examples/1cpt_fo_model_cl_vc_cor.json
tests/testthat/json_examples/1cpt_fo_model.json
tests/testthat/non_regression/campsis/pk_pd_appended/model.campsis
tests/testthat/non_regression/campsis/pk_pd_appended/omega.csv
tests/testthat/non_regression/campsis/pk_pd_appended/theta.csv
tests/testthat/non_regression/campsis/pk_pd_appended/sigma.csv
tests/testthat/non_regression/mrgsolve/2_cpt_model_abs_if_statements.txt
tests/testthat/non_regression/mrgsolve/2_cpt_model_abs_comments.txt
tests/testthat/non_regression/rxode/2_cpt_model_abs_if_statements.txt
tests/testthat/non_regression/rxode/2_cpt_model_abs_comments.txt
vignettes/v03_model_adaptation.Rmd
vignettes/campsismod.Rmd
vignettes/v02_structural_model.Rmd
vignettes/v01_model_creation.Rmd
vignettes/v04_compartment_properties.Rmd
vignettes/v06_append_pd_model.Rmd
vignettes/v05_parameters.Rmd
vignettes/path_to_model_folder/model.campsis
vignettes/path_to_model_folder/omega.csv
vignettes/path_to_model_folder/theta.csv
vignettes/path_to_model_folder/sigma.csv
vignettes/resources/results_rxode.png
vignettes/resources/notepad_plugin_example.png
vignettes/resources/results_mrgsolve.png
vignettes/resources/minimal_model_theta.png
vignettes/resources/minimalist_example_obs_cp.png
vignettes/resources/minimalist_example_sim2.png
vignettes/resources/campsis_npp_plugin.xml
vignettes/resources/minimal_model_omega.png
vignettes/resources/minimalist_example_cmt_properties.png
vignettes/resources/pkpd_model_effect.png
vignettes/resources/minimalist_example_sim1.png
vignettes/resources/pkpd_model_concentration.png
vignettes/resources/effect_cmt_model/model.campsis
vignettes/resources/effect_cmt_model/omega.csv
vignettes/resources/effect_cmt_model/theta.csv
vignettes/resources/minimalist_model/model.campsis
vignettes/resources/minimalist_model/omega.csv
vignettes/resources/minimalist_model/theta.csv
data/model_suite.rda
man/CodeRecords.Rd
man/is_empty_line.Rd
man/colon-equals.Rd
man/is_matrix_positive_definite.Rd
man/sample_from_inverse_chi_squared_core.Rd
man/parse_statements.Rd
man/campsis_model-class.Rd
man/JSONElement.Rd
man/variable_pattern_no_start_str.Rd
man/json_to_campsis_model.Rd
man/check_matrix_is_positive_definite.Rd
man/read.model.Rd
man/get_omega_indexes.Rd
man/read.pmxmod.Rd
man/mapJSONPropertiesToS4Slots.Rd
man/LagTime.Rd
man/length.Rd
man/variable_pattern-class.Rd
man/disable.Rd
man/write.Rd
man/sample_generic.Rd
man/rxode_type-class.Rd
man/minIndex.Rd
man/read.Rd
man/IfStatement.Rd
man/replace.Rd
man/compartment_initial_condition-class.Rd
man/get_uncertainty.Rd
man/loadFromJSON.Rd
man/sigma-class.Rd
man/Compartment.Rd
man/appendModel.Rd
man/indexOf.Rd
man/as.data.frame.Rd
man/getByName.Rd
man/OmegaBlock.Rd
man/standardise.Rd
man/add_suffix.Rd
man/json_to_parameter.Rd
man/get_nonmem_name.Rd
man/add.Rd
man/delete.Rd
man/extract_text_between_brackets.Rd
man/pattern-class.Rd
man/compartment_infusion_duration-class.Rd
man/add_rse.Rd
man/get_record_delimiter.Rd
man/find.Rd
man/get_var_cov.Rd
man/single_array_parameter-class.Rd
man/mrgsolve_table.Rd
man/f_record-class.Rd
man/if_statement-class.Rd
man/pmx_position_by_index-class.Rd
man/move.Rd
man/model_statements-class.Rd
man/export_type-class.Rd
man/get_record_name.Rd
man/ManualReplicationSettings.Rd
man/write_record_delimiter.Rd
man/OdeRecord.Rd
man/export_to_json.Rd
man/compartment_bioavailability-class.Rd
man/assert_single_character_string.Rd
man/get_campsismod_options.Rd
man/Bioavailability.Rd
man/rate_record-class.Rd
man/append_comment.Rd
man/replicate.Rd
man/export.Rd
man/VariablePattern.Rd
man/is_comment.Rd
man/contains.Rd
man/double_array_parameter-class.Rd
man/compartments-class.Rd
man/map_json_properties_to_s4_slots.Rd
man/match_double_array_parameter.Rd
man/getCompartmentIndex.Rd
man/compartment_infusion_rate-class.Rd
man/read.allparameters.Rd
man/append_code_records.Rd
man/Parameters.Rd
man/read.parameters.Rd
man/pmx_position-class.Rd
man/get_campsismod_option.Rd
man/has_exact_method.Rd
man/is_if_statement.Rd
man/pmx_element-class.Rd
man/model_statement-class.Rd
man/trim.Rd
man/Sigma.Rd
man/InfusionRate.Rd
man/sample_from_multivariate_normal_distribution_core.Rd
man/replication_settings-class.Rd
man/convert_any_comment.Rd
man/Comment.Rd
man/all_na.Rd
man/OmegaBlocks.Rd
man/Omega.Rd
man/extract_lhs.Rd
man/mrgsolve_main.Rd
man/Position.Rd
man/processDoubleArrayArguments.Rd
man/getUncertainty.Rd
man/is_rxode.Rd
man/LineBreak.Rd
man/process_extra_arg.Rd
man/jsonToParameter.Rd
man/compartment_lag_time-class.Rd
man/rxode_matrix.Rd
man/map_s4_slots_to_json_properties.Rd
man/min_max_default.Rd
man/mrgsolve_matrix.Rd
man/read.varcov.Rd
man/default.Rd
man/auto_detect_nonmem.Rd
man/UnsupportedDestException.Rd
man/duration_record-class.Rd
man/Ode.Rd
man/appendCompartments.Rd
man/updateCompartments.Rd
man/to_string.Rd
man/CampsisModel.Rd
man/model_suite.Rd
man/manual_replication_settings-class.Rd
man/is_block_fixed.Rd
man/min_index.Rd
man/mrgsolve_ode.Rd
man/comment-class.Rd
man/select.Rd
man/max_index.Rd
man/error_record-class.Rd
man/pmx_position_by_element-class.Rd
man/ode_record-class.Rd
man/write_varcov.Rd
man/replaceAll.Rd
man/grapes-greater-than-grapes.Rd
man/Compartments.Rd
man/update_parameters.Rd
man/get_name.Rd
man/process_json_double_array_parameter.Rd
man/AutoReplicationSettings.Rd
man/is_strict_record_delimiter.Rd
man/get_mapping_matrix.Rd
man/is_diag.Rd
man/ode-class.Rd
man/mrgsolve_type-class.Rd
man/MainRecord.Rd
man/has_off_diagonal_omegas.Rd
man/ErrorRecord.Rd
man/methods_global_functions.Rd
man/mrgsolve_param.Rd
man/auto_replication_settings-class.Rd
man/mrgsolve_block.Rd
man/append_parameters.Rd
man/rxode_code.Rd
man/Theta.Rd
man/unknown_statement-class.Rd
man/get_names.Rd
man/getNames.Rd
man/code_record-class.Rd
man/sample_from_inverse_wishart_core.Rd
man/is_ode.Rd
man/open_json.Rd
man/toString.Rd
man/add_ode_compartment.Rd
man/InfusionDuration.Rd
man/parameters-class.Rd
man/getByIndex.Rd
man/get_name_in_model.Rd
man/if_statement_pattern_str.Rd
man/variable_pattern_str.Rd
man/convert_outvars_to_capture.Rd
man/theta-class.Rd
man/init_record-class.Rd
man/get_omega_block.Rd
man/flag_sampled_parameter_rows.Rd
man/maxIndex.Rd
man/read.campsis.Rd
man/replace_all.Rd
man/compartment_properties-class.Rd
man/isDiag.Rd
man/UnknownStatement.Rd
man/processExtraArg.Rd
man/getName.Rd
man/InitialCondition.Rd
man/remove_na_column.Rd
man/equation-class.Rd
man/compartment-class.Rd
man/load_from_json.Rd
man/get_prefix.Rd
man/match_single_array_parameter.Rd
man/Equation.Rd
man/get_compartments.Rd
man/statements_record-class.Rd
man/compartment_property-class.Rd
man/line_break-class.Rd
man/ModelStatements.Rd
man/rxode_params.Rd
man/main_record-class.Rd
man/is_equation.Rd
man/index_of.Rd
man/mrgsolve_compartment.Rd
man/is_record_delimiter.Rd
man/get_by_index.Rd
man/fixOmega.Rd
man/sample_from_inverse_chi_squared_or_wishart.Rd
man/mapS4SlotsToJSONProperties.Rd
man/has_comment.Rd
man/addSuffix.Rd
man/properties_record-class.Rd
man/shift_omega_indexes.Rd
man/sort.Rd
man/add_properties.Rd
man/get_record_equation_names.Rd
man/update_omegas.Rd
man/mrgsolve_capture.Rd
man/pmx_list-class.Rd
man/set_min_max.Rd
man/write_parameters.Rd
man/json_to_off_diag_parameter.Rd
man/Pattern.Rd
man/rxodeMatrix.Rd
man/fix_omega.Rd
man/update_compartments.Rd
man/json_element-class.Rd
man/get_by_name.Rd
man/remove_trailing_line_breaks.Rd
man/getNameInModel.Rd
man/get_compartment_index.Rd
man/lag_record-class.Rd
man/replicated_campsis_model-class.Rd
man/parse_if_statement.Rd
man/extract_rhs.Rd
man/sample_from_multivariate_normal_distribution.Rd
man/parameter-class.Rd
man/omega-class.Rd
man/figures/logo.png
