Description Usage Arguments Details Examples
Make an HTML table summarizing chemical differences.
1 2 3 |
comptab |
list or data frame, summary of comparisons generated by |
vars |
character, two variables to tabulate |
comptab1 |
list, output of |
comptab2 |
list, output of |
comptab3 |
list, output of |
xsummary
makes an HTML table (using xtable
) and adds bold and underline formatting to highlight significant chemical differences.
The p-value is bolded if it is less than 0.05, and the percent common language effect size (CLES
) is bolded if it is <= 40 or >= 60.
The mean (or median) difference is [underlined / bolded] if [only one of / both] the p-value and CLES pass these cutoffs.
The generated table is written to the console, and can be used in a vignette using the results = "asis"
chunk option.
The function also returns (invisibly) the data frame used to make the table; this data frame differs from comptab
by having row names added (alphabetical one-letter IDs for the datasets).
xsummary2
is an updated version that is used in the current vignettes in the package.
It shows negative numbers in bold (p-value and CLES are not shown).
xsummary3
is a further revision that shows GRAVY and pI; it is used in the osmotic_bact and osmotic_halo vignettes.
1 2 3 4 5 | comptab <- lapply(c("JKMF10", "WDO+15_C.N"), function(dataset) {
pdat <- pdat_colorectal(dataset)
get_comptab(pdat, oldstyle = TRUE)
})
xsummary(comptab)
|
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