get_marker_chr: Get chromosome numbers for markers

In cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Get chromosome numbers for markers

Description

Given a vector of marker names or numbers, this function returns the chromosome on which each marker lives.Covariates are assigned to chromosome 0.

Usage

get_marker_chr(data_obj, markers, character_names = TRUE)

Arguments

data_obj	a Cape object
markers	A vector of marker names
character_names	A logical value indicating whether the marker names are characters (TRUE) or numbers (FALSE)

Value

A vector the same length as the input markers vector indicating which chromosome each marker in markers lives on.

Examples

## Not run: 
marker_names <- dimnames(geno_obj)[[3]]
marker_chr <- get_marker_chr(data_obj, marker_names)

## End(Not run)

cape documentation built on May 20, 2022, 1:06 a.m.