Files in cauphy
Trait Evolution on Phylogenies Using the Cauchy Process
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/rTraitCauchy.R
R/cauphylm.R
R/data.R
R/plot_asr.R
R/densities.R
R/fitCauchy.R
R/optimization.R
R/utils.R
src/Makevars
src/SimulateTrait.h
src/ComplexLog.h
src/Tree.h
src/SimulateTrait.c
src/Cauchy.h
src/Cauchy_R.c
src/Kahan.c
src/Utils.c
src/init.c
src/ComplexLog.c
src/Utils.h
src/Kahan.h
src/Cauchy.c
src/Tree.c
inst/CITATION
inst/WORDLIST
inst/doc/lizards.html
inst/doc/lizards.Rmd
inst/doc/lizards.R
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/spelling.R
tests/testthat/testAncestralStateReconstruction.R
tests/testthat/testFitFunctions.R
tests/testthat/testReRoot.R
tests/testthat/testCauchyLikelihood.R
tests/testthat/testSimulation.R
tests/testthat/testInit.R
tests/testthat/testIncrementReconstruction.R
tests/testthat/testCauchyREML.R
vignettes/lizards.Rmd
data/lizards.rda
man/initLambdaParameter.Rd
man/vcov.cauphyfit.Rd
man/getBoundsLambda.Rd
man/getBoundsCauchy.Rd
man/getStartingValuesCauchy.Rd
man/increment.Rd
man/getStartingValuesLambda.Rd
man/plot.ancestralCauchy.Rd
man/posteriorDensityAncestral.Rd
man/reroottip.Rd
man/safe_get.Rd
man/simulateTipsCauchy.Rd
man/initPositionParameter.Rd
man/getParamNames.Rd
man/minusLikelihoodREML.Rd
man/logDensityTipsCauchy.Rd
man/minusLikelihoodFixedRoot.Rd
man/do_optim.Rd
man/hdi.ancestralCauchy.Rd
man/lizards.Rd
man/getStartingValues.Rd
man/minusLikelihoodRandomRoot.Rd
man/minusLikelihoodFixedRoot_mu.Rd
man/checkDuplicates.Rd
man/find_modes.Rd
man/maxLambda.Rd
man/posteriorDensityIncrement.Rd
man/check_tree.Rd
man/rTraitCauchy.Rd
man/printRTreeTest.Rd
man/initDispersionParameter.Rd
man/fit_function.Rd
man/vcov.cauphylm.Rd
man/transformBranchLengths.Rd
man/compute_vcov.Rd
man/plot.profile.cauphyfit.Rd
man/checkTraitTree.Rd
man/fitCauchy.internal.Rd
man/profile.cauphyfit.Rd
man/minusLikelihoodFixedRoot_lm.Rd
man/plot.invisible.Rd
man/cauphylm.Rd
man/fitCauchy.Rd
man/plot_asr.Rd
man/getBounds.Rd
man/ancestral.Rd
