Files in cbioportalR

Browse and Query Clinical and Genomic Data from cBioPortal

NEWS.md README.md R/cbioportalr-package.R R/by_database.R R/by_samples.R R/utils-pipe.R R/cbp_api.R R/data.R R/by_genes_or_panel.R R/genomics_by_sample.R R/by_patients.R R/by_studies.R R/genomics_by_study.R R/utils.R R/authenticate.R inst/doc/overview-of-workflow.Rmd inst/doc/internal-structure.Rmd inst/doc/internal-structure.R tests/testthat.R tests/spelling.R tests/testthat/test-genes.R tests/testthat/test-by-study.R tests/testthat/test-by-sample.R tests/testthat/test-by-patient.R tests/testthat/test-cbp_api.R tests/testthat/test-genomics-by-study.R tests/testthat/test-authentication.R tests/testthat/test-genomics-by-sample.R tests/testthat/test-by-db.R vignettes/overview-of-workflow.Rmd vignettes/precompile.R vignettes/internal-structure.Rmd man/get_mutations_by_study.Rd man/get_genetics_by_sample.Rd man/dot-get_clinical_by_list_item.Rd man/get_cbioportal_token.Rd man/get_clinical_by_sample.Rd man/available_patients.Rd man/get_genetics_by_study.Rd man/available_studies.Rd man/get_study_info.Rd man/available_clinical_attributes.Rd man/get_clinical_by_patient.Rd man/get_entrez_id.Rd man/test_cbioportal_db.Rd man/cbp_api.Rd man/get_fusions_by_sample.Rd man/null-default.Rd man/available_gene_panels.Rd man/available_profiles.Rd man/cbioportalR-package.Rd man/get_hugo_symbol.Rd man/dot-get_data_by_sample.Rd man/get_fusions_by_study.Rd man/pipe.Rd man/set_cbioportal_db.Rd man/available_samples.Rd man/get_gene_panel.Rd man/impact_gene_info.Rd man/get_genes.Rd man/get_segments_by_study.Rd man/get_samples_by_patient.Rd man/dot-get_clinical_pat_by_list_item.Rd man/get_alias.Rd man/available_sample_lists.Rd man/get_clinical_by_study.Rd man/get_cna_by_sample.Rd man/get_mutations_by_sample.Rd man/get_panel_by_sample.Rd man/get_cna_by_study.Rd man/get_segments_by_sample.Rd man/dot-get_data_by_study.Rd