get_fusions_by_study: Get Fusions By Study

In cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal

Get Fusions By Study

Description

Get Fusions By Study

Usage

get_fusions_by_study(
  study_id = NULL,
  molecular_profile_id = NULL,
  base_url = NULL
)

get_structural_variants_by_study(
  study_id = NULL,
  molecular_profile_id = NULL,
  base_url = NULL
)

Arguments

study_id	A study ID to query mutations. If NULL, guesses study ID based on molecular_profile_id.
molecular_profile_id	a molecular profile to query mutations. If NULL, guesses molecular_profile_id based on study ID.
base_url	The database URL to query If NULL will default to URL set with ⁠set_cbioportal_db(<your_db>)⁠

Value

A dataframe of fusions

Examples

## Not run: 
# These return the same results
get_fusions_by_study(molecular_profile_id = "prad_msk_2019_structural_variants")

get_structural_variants_by_study(molecular_profile_id =
       "prad_msk_2019_structural_variants")
       
## End(Not run)

cbioportalR documentation built on Oct. 6, 2023, 1:07 a.m.