cbioportalR-package: cbioportalR: Browse and Query Clinical and Genomic Data from...
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cbioportalR-package R Documentation
cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal
Description
Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints https://www.cbioportal.org/api/swagger-ui/index.html. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See https://www.cbioportal.org/ and Gao et al., (2013) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1126/scisignal.2004088")} for more information on the cBioPortal web resource.
Author(s)
Maintainer: Karissa Whiting karissa.whiting@gmail.com (ORCID)
See Also
Useful links:
cbioportalR documentation built on Oct. 6, 2023, 1:07 a.m.
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| cbioportalR-package | R Documentation |
cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal
Description
Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints https://www.cbioportal.org/api/swagger-ui/index.html. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See https://www.cbioportal.org/ and Gao et al., (2013) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1126/scisignal.2004088")} for more information on the cBioPortal web resource.
Author(s)
Maintainer: Karissa Whiting karissa.whiting@gmail.com (ORCID)
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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