.get_clinical_by_list_item | R Documentation |
Get clinical data by attribute, study ID and sample ID
.get_clinical_by_list_item(
study_id = NULL,
sample_id = NULL,
clinical_attribute = NULL,
base_url = NULL
)
study_id |
A string indicating the study ID from which to pull data. If no study ID, will
guess the study ID based on your URL and inform. Only 1 study ID can be passed. If mutations/cna from
more than 1 study needed, see |
sample_id |
a vector of sample IDs (character) |
clinical_attribute |
one or more clinical attributes for your study. If none provided, will return all attributes available for studies |
base_url |
The database URL to query
If |
a dataframe of a specific clinical attribute
## Not run:
.get_clinical_by_list_item(study_id = "acc_tcga", sample_id = "TCGA-OR-A5J2-01",
clinical_attribute = "CANCER_TYPE", base_url = 'www.cbioportal.org/api')
## End(Not run)
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