cbp_api: Core function to retrieve data from cBioPortal API.

In cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal

Core function to retrieve data from cBioPortal API.

Description

Core function to retrieve data from cBioPortal API.

Usage

cbp_api(
  url_path,
  method = NULL,
  token = get_cbioportal_token(),
  body = NULL,
  extra_box = FALSE,
  quiet = TRUE,
  base_url = NULL
)

Arguments

url_path	The url path for API call
method	Which API method to use. Must be "get" or "post". Default is "get".
token	Authentication token, if needed. Default is get_cbioportal_token()
body	Arguments passed to API call (e.g. sample ID or gene IDs)
extra_box	Some functions require an additional list() wrapping around body idk why
quiet	Returns queried URL. Default is TRUE
base_url	The database URL to query

Value

A parsed API response

Examples

## Not run: 
cbp_api(url_path = "genes/TP53", base_url = "public")

## End(Not run)

cbioportalR documentation built on Oct. 6, 2023, 1:07 a.m.