| addDateOfReportRun | Add date of report running |
| addFacetPanel | Add facet-panel to single plotly plot. |
| addLayerToScatterPlot | Helper function to add layer to scatter plot |
| addReferenceLinesClinDataPlot | Add reference (horizontal/vertical/diagonal) lines to a... |
| addSelectBtn | Add selection box(es) to a plotly plot. |
| addWatermark | Add a watermark to a 'plotly' object. |
| annotateData | Annotate a dataset. |
| barplotClinData | Barplot visualization of clinical data. |
| boxplotClinData | Boxplot interactive plot. |
| buildBook | Build the book |
| checkAvailabilityMetadata | Check availability of arguments in list |
| checkChapterParallel | Check if a chapter is run internally in parallel or not. |
| checkConfigFile | Check a configuration file (in _YAML_ format) based on a... |
| checkReportTitles | Check report titles |
| checkTemplatesName | Checks of config files template. |
| checkValueType | Check if the specified 'valueType' parameter can be passed to... |
| clinDataReview-common-args | Common arguments for the functions of the clinDataReview... |
| clinDataReview-common-args-report | Common parameters for the clinical data reporting function |
| clinDataReview-common-args-summaryStatsVis | Common arguments for the plotting functions summary... |
| clinDataReview-templates | Rmarkdown templates for clinical data |
| collapseHtmlContent | Function to create collapsible HTML content |
| combineButtonsAndPlot | Combine select box(es) and the plot |
| convertMdToHtml | Convert the Md file for a specific chapter to html |
| convertReportToAspx | Convert report format from .html to .aspx |
| countNLines | Count number of lines in a vector |
| createClinDataReviewReportSkeleton | Create the skeleton of a report |
| createExampleMetadata | Create an example metadata file |
| createMainConfigSkeleton | Create the config file for the skeleton |
| createOutputYaml | Create a output YAML file |
| createPatientProfileVar | Create link to patient profile |
| createRedirectPage | Create a redirect page |
| createTemplateDoc | Create documentation for clinical data template reports... |
| errorbarClinData | Interactive plot of confidence interval/error interval of... |
| exportSessionInfoToMd | Combine all session informations across all clinical data... |
| filterData | Filter a dataset based on specified filters. |
| filterDataSingle | Filter data for a single filter |
| forceParams | Force the evaluation of the parameters from config file. |
| formatDataForPlotClinData | Format data for interactive plot for clinical data |
| formatHoverText | Format hover text for use in plotly interactive plots. The... |
| formatPathDateInfoMetadata | Format the info on paths from metadata |
| formatPlotlyClinData | Format interactive plot, with possibility to download patient... |
| formatToHierarchicalData | Format data to a hierarchical data, in the format as required... |
| getAxisLab | Get axis label |
| getAxisLabs | Set different variables for the x-axis labels |
| getAxisLimPlot | Get axis limits for a 'ggplot' plot from the input dataset. |
| getDataReferenceLines | Extract data for the reference lines |
| getDimGgplot | Get plot dimensions |
| getExtraDirs | Get extra directory(ies) required for the clinical data... |
| getFacetVars | Get facetting variables from facet parameters. |
| getFctCode | Get function code |
| getFctTypeReferenceLines | Get the names of the 'ggplot' function to use for the... |
| getHeightLab | Get height of labels: title, subtitle or caption |
| getHTMLToc | Get HTML toc |
| getIndexHTMLTitle | Get index of the line containing the HTML title in a vector... |
| getInterimResFile | Get interim res file |
| getJitterVar | Add jitter to the variable of the plot, based on the... |
| getJsDepClinDataReview | Get Javascript custom scripts required for specific clinical... |
| getMdFromConfig | Get path of the 'HTML' file corresponding to a specific... |
| getMdHeader | Get Markdown header, for creation in Rmarkdown. |
| getMetadata | Read metadata file |
| getParamsFromConfig | Get parameters from a config file |
| getParFctReferenceLines | Get parameter of function used for reference lines |
| getPathHyperlink | Get path ('href') property from hyperlink(s). |
| getPathTemplate | Get path of template clinical data report |
| getPlotTableVars | Extract variables displayed in the attached table, for each... |
| getPositionAndMargins | Get margins and positions of specific elements for a clinical... |
| getSizePlot | Get dimensions for a clinical data plot |
| getTocNumbering | Get TOC numbering |
| getWatermark | Get a watermark, to be included in a clinical visualization |
| gitbook_clinDataReview_report | Clinical data format for bookdown report. |
| html_clinDataReview_report | Clinical data format for rmarkdown report. |
| JSONSchToRd | Get R Documentation from a JSON schema. |
| knit_print.clinDataReview | Print 'clinDataReviewTable' object in a knitted document... |
| knitPrintClinDataReview | Include output from clinical data, or list of such outputs in... |
| knit_print.clinDataReviewMetadata | Print metadata file in the clinical data report |
| layoutClinData | Set layout for a clinical data plot. |
| merge.sessionInfo | Merge multiple session information |
| moveSkeletonFiles | Move skeleton files from the package to a directory |
| moveXpt | Move data sets from clinUtils |
| plotCountClinData | Interactive plot of 'count' data |
| postProcessReport | Convert clinical data Markdown files to HTML |
| print.clinDataReview | Print a 'clinDataReview' object in the console |
| processData | Process a dataset. |
| renamePathDateInfoMetadata | Rename variable names of metadata info |
| renderChapter | Render one chapter of a clinical report, based on a... |
| render_clinDataReviewReport | Render a clinical data review report. |
| renderFile | Render a rmarkdown file, possibly in a new R session |
| scatterplotClinData | Scatterplot of variables of interest for clinical data... |
| setFacetLayoutWrap | Set facetting layout for 'wrap' facetting. |
| setPaletteStaticScatterplotClinData | Get standard palette for the 'staticScatterplotClinData'... |
| splitChapter | Split a chapter based on the 'split_by' parameter. |
| staticScatterplotClinData | Scatterplot of variables of interest for clinical data... |
| sunburstClinData | Sunburst interactive plot. |
| tableClinData | Create a 'clinical data table', associated to a plot. |
| timeProfileIntervalPlot | Visualize time intervals across subjects/parameters. |
| transformData | Transform data. |
| treemapClinData | Treemap interactive plot. |
| varToFm | Get formula for a specific variable, to be used in aesthetic... |
| zipClinDataReview | Zip the clinical data report |
