coala: A Framework for Coalescent Simulation

Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.

Package details

AuthorPaul Staab [aut, cre], Dirk Metzler [aut, ths], Jorge E. Amaya Romero [ctb]
MaintainerPaul Staab <[email protected]>
LicenseMIT + file LICENSE
Version0.5.2
URL https://github.com/statgenlmu/coala
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("coala")

Try the coala package in your browser

Any scripts or data that you put into this service are public.

coala documentation built on Nov. 17, 2017, 8:17 a.m.