View source: R/sumstat_trees.R
sumstat_trees | R Documentation |
This statistic returns ancestral tress in NEWICK format.
sumstat_trees(name = "trees")
name |
The name of the summary statistic. When simulating a model, the value of the statistics are written to an entry of the returned list with this name. Summary statistic names must be unique in a model. |
To create a demographic model: coal_model
To calculate this statistic from data: calc_sumstats_from_data
Other summary statistics:
sumstat_dna()
,
sumstat_file()
,
sumstat_four_gamete()
,
sumstat_ihh()
,
sumstat_jsfs()
,
sumstat_mcmf()
,
sumstat_nucleotide_div()
,
sumstat_omega()
,
sumstat_seg_sites()
,
sumstat_sfs()
,
sumstat_tajimas_d()
# Without recombination: model <- coal_model(4, 2) + sumstat_trees() stats <- simulate(model) print(stats$trees) # With recombination: model <- model + feat_recombination(5) stats <- simulate(model) print(stats$trees)
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