Files in coala

A Framework for Coalescent Simulation

MD5

NEWS.md README.md

NAMESPACE

ToDo

DESCRIPTION

LICENSE

R/feature.R R/RcppExports.R R/sumstat_ihh.R R/parameter_variation.R R/sumstat_four_gamete.R R/simulator_scrm.R R/parameter_zero_inflation.R R/sumstat_seg_sites.R R/import_popgenome.R R/sumstat_dna.R R/parameter_prior.R R/sumstat_mcmf.R R/parameter.R R/feature_size_change.R R/simulator_class.R R/model_check.R R/simulator_ms.R R/model.R R/segsites.R R/locus.R R/model_print.R R/feature_sumstats.R R/feature_mutation.R R/feature_pop_merge.R R/model_build.R R/sumstat_omega.R R/feature_ignore_singletons.R R/tools.R R/sumstat_trees.R R/sumstat.R R/cache.R R/model_examples.R R/sumstat_jsfs.R R/coala.R R/onLoad.R R/feature_outgroup.R R/feature_growth.R R/model_getters.R R/simulator_seqgen.R R/interface_abc.R R/model_simulate.R R/model_scale.R R/feature_sample.R R/sumstat_file.R R/feature_migration.R R/feature_unphased.R R/search_executable.R R/sumstat_nucleotide_div.R R/sumstat_tajimas_d.R R/feature_recombination.R R/simulation_tasks.R R/sumstat_sfs.R R/simulator_msms.R R/feature_selection.R

src/parse_ms_output.cpp

src/stat_mcmf.cpp

src/RcppExports.cpp

src/unphase_segsites.cpp

src/seg_sites.cpp

src/stat_nucleotide_div.cpp

src/parse_trees.cpp

src/stat_jsfs.cpp

src/parse_seqgen_output.cpp

src/stat_fpc.cpp

inst/CITATION

inst/include/coala.h

inst/doc/coala-extend.html

inst/doc/coala-examples.Rmd inst/doc/coala-abc.R

inst/doc/coala-install.html

inst/doc/coala-install.Rmd inst/doc/coala-data-import.R

inst/doc/coala-examples.html

inst/doc/coala-intro.Rmd

inst/doc/coala-intro.html

inst/doc/coala-extend.Rmd inst/doc/coala-extend.R inst/doc/coala-data-import.Rmd inst/doc/coala-examples.R

inst/doc/coala-abc.html

inst/doc/coala-data-import.html

inst/doc/coala-install.R inst/doc/coala-abc.Rmd inst/doc/coala-intro.R

inst/example_fasta_files/sample.fasta

build/vignette.rds

tests/testthat.R tests/testthat/test-feature-outgroup.R tests/testthat/test-sumstat-file.R tests/testthat/test-simulator-scrm.R tests/testthat/test-model-class.R tests/testthat/test-feature-selection.R tests/testthat/test-parameter-zero-inflation.R tests/testthat/test-interface-abc.R tests/testthat/test-tools.R tests/testthat/test-sumstat-iHH.R tests/testthat/test-feature-migration.R tests/testthat/test-sumstat-fpc.R tests/testthat/test-simulation-tasks.R tests/testthat/test-simulator-ms.R tests/testthat/test-feature-samples.R tests/testthat/test-simulator-seqgen.R tests/testthat/test-sumstat-omega.R tests/testthat/test-search-executables.R tests/testthat/test-feature-class.R tests/testthat/test-segsites-class.R tests/testthat/test-sumstat-jsfs.R tests/testthat/test-parameter-variation.R tests/testthat/test-sumstat-tajimas-d.R tests/testthat/test-tempfile.R tests/testthat/test-feature-mutation.R tests/testthat/test-sumstat-trees.R tests/testthat/test-simulators.R tests/testthat/test-sumstat-pi.R tests/testthat/test-feature-pop-merge.R tests/testthat/test-sumstat-dna.R tests/testthat/test-sumstat-mcmf.R tests/testthat/test-travis-setup.R tests/testthat/test-parameter-priors.R tests/testthat/test-sumstat-class.R tests/testthat/test-model-cache.R tests/testthat/test-locus.R tests/testthat/test-feature-unphased.R tests/testthat/test-feature-growth.R tests/testthat/test-simulator-class.R tests/testthat/test-import-popgenome.R tests/testthat/test-sumstat-sfs.R tests/testthat/test-feature-size-change.R tests/testthat/test-simulator-msms.R tests/testthat/test-feature-ign-singletons.R tests/testthat/test-model-simulation.R tests/testthat/test-sumstat-segsites.R tests/testthat/test-feature-recombination.R tests/testthat/test-parameter-class.R vignettes/coala-examples.Rmd vignettes/coala-install.Rmd vignettes/coala-intro.Rmd vignettes/coala-extend.Rmd vignettes/coala-data-import.Rmd vignettes/coala-abc.Rmd

vignettes/img/abc_posterior.jpeg

man/sumstat_jsfs.Rd man/sumstat_omega.Rd man/coala-package.Rd man/create_abc_sumstat.Rd man/conv_to_ms_arg.Rd man/scale_model.Rd man/locus_trio.Rd man/simulator_msms.Rd man/sumstat_class.Rd man/segsites.Rd man/simulator_seqgen.Rd man/as.segsites.GENOME.Rd man/feat_sample.Rd man/simulator_ms.Rd man/locus.Rd man/plus-.coalmodelpart.Rd man/sumstat_sfs.Rd man/feat_pop_merge.Rd man/sumstat_tajimas_d.Rd man/feat_mutation.Rd man/sumstat_ihh.Rd man/coal_model.Rd man/sumstat_four_gamete.Rd man/simulate.coalmodel.Rd man/create_abc_param.Rd man/feat_growth.Rd man/calc_sumstats_from_data.Rd man/sumstat_dna.Rd man/par_variation.Rd man/sumstat_nucleotide_div.Rd man/par_zero_inflation.Rd man/sumstat_seg_sites.Rd man/list_simulators.Rd man/feat_recombination.Rd man/get_features.Rd man/feat_migration.Rd man/feat_outgroup.Rd man/check_model.Rd man/search_executable.Rd man/as.segsites.Rd man/calc_jsfs.Rd man/feat_selection.Rd man/feat_unphased.Rd man/sumstat_file.Rd man/sumstat_mcmf.Rd man/simulator_scrm.Rd man/feat_ignore_singletons.Rd man/feat_size_change.Rd man/sumstat_trees.Rd man/parameter.Rd

coala documentation built on Jan. 5, 2023, 5:11 p.m.