conv_to_ms_arg: Generate command line arguments for features

In coala: A Framework for Coalescent Simulation

Generate command line arguments for features

Description

These functions are exported only for technical reasons (because they are S3 methods) and are not intended for users.

Usage

## S3 method for class 'growth'
conv_to_ms_arg(feature, model)

## S3 method for class 'growth'
conv_to_msms_arg(feature, model)

## S3 method for class 'growth'
conv_to_scrm_arg(feature, model)

## S3 method for class 'growth'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'ign_singletons'
conv_to_ms_arg(feature, model)

## S3 method for class 'ign_singletons'
conv_to_msms_arg(feature, model)

## S3 method for class 'ign_singletons'
conv_to_scrm_arg(feature, model)

## S3 method for class 'ign_singletons'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'migration'
conv_to_ms_arg(feature, model)

## S3 method for class 'migration'
conv_to_msms_arg(feature, model)

## S3 method for class 'migration'
conv_to_scrm_arg(feature, model)

## S3 method for class 'migration'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'mutation'
conv_to_ms_arg(feature, model)

## S3 method for class 'mutation'
conv_to_msms_arg(feature, model)

## S3 method for class 'mutation'
conv_to_scrm_arg(feature, model)

## S3 method for class 'mutation'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'outgroup'
conv_to_ms_arg(feature, model)

## S3 method for class 'outgroup'
conv_to_msms_arg(feature, model)

## S3 method for class 'outgroup'
conv_to_scrm_arg(feature, model)

## S3 method for class 'outgroup'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'pop_merge'
conv_to_ms_arg(feature, model)

## S3 method for class 'pop_merge'
conv_to_msms_arg(feature, model)

## S3 method for class 'pop_merge'
conv_to_scrm_arg(feature, model)

## S3 method for class 'pop_merge'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'recombination'
conv_to_ms_arg(feature, model)

## S3 method for class 'recombination'
conv_to_msms_arg(feature, model)

## S3 method for class 'recombination'
conv_to_scrm_arg(feature, model)

## S3 method for class 'recombination'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'sample'
conv_to_ms_arg(feature, model)

## S3 method for class 'sample'
conv_to_msms_arg(feature, model)

## S3 method for class 'sample'
conv_to_scrm_arg(feature, model)

## S3 method for class 'sample'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'selection'
conv_to_ms_arg(feature, model)

## S3 method for class 'selection'
conv_to_scrm_arg(feature, model)

## S3 method for class 'selection'
conv_to_msms_arg(feature, model)

## S3 method for class 'selection'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'size_change'
conv_to_ms_arg(feature, model)

## S3 method for class 'size_change'
conv_to_msms_arg(feature, model)

## S3 method for class 'size_change'
conv_to_scrm_arg(feature, model)

## S3 method for class 'size_change'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'seg_sites_feat'
conv_to_ms_arg(feature, model)

## S3 method for class 'seg_sites_feat'
conv_to_msms_arg(feature, model)

## S3 method for class 'seg_sites_feat'
conv_to_scrm_arg(feature, model)

## S3 method for class 'seg_sites_feat'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'trees_feat'
conv_to_ms_arg(feature, model)

## S3 method for class 'trees_feat'
conv_to_msms_arg(feature, model)

## S3 method for class 'trees_feat'
conv_to_scrm_arg(feature, model)

## S3 method for class 'trees_feat'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'files_feat'
conv_to_ms_arg(feature, model)

## S3 method for class 'files_feat'
conv_to_msms_arg(feature, model)

## S3 method for class 'files_feat'
conv_to_scrm_arg(feature, model)

## S3 method for class 'files_feat'
conv_to_seqgen_arg(feature, model)

## S3 method for class 'unphased'
conv_to_ms_arg(feature, model)

## S3 method for class 'unphased'
conv_to_msms_arg(feature, model)

## S3 method for class 'unphased'
conv_to_scrm_arg(feature, model)

## S3 method for class 'unphased'
conv_to_seqgen_arg(feature, model)

conv_to_ms_arg(feature, model)

## Default S3 method:
conv_to_ms_arg(feature, model)

## Default S3 method:
conv_to_msms_arg(feature, model)

## Default S3 method:
conv_to_scrm_arg(feature, model)

## Default S3 method:
conv_to_seqgen_arg(feature, model)

Arguments

feature	The feature for which the argument is generated
model	The complete model for which the argument is generated

Methods (by class)

• conv_to_ms_arg(growth): Feature conversion

• conv_to_ms_arg(ign_singletons): Feature conversion

• conv_to_ms_arg(migration): Feature conversion

• conv_to_ms_arg(mutation): Feature conversion

• conv_to_ms_arg(outgroup): Feature conversion

• conv_to_ms_arg(pop_merge): Feature conversion

• conv_to_ms_arg(recombination): Feature conversion

• conv_to_ms_arg(sample): Feature conversion

• conv_to_ms_arg(selection): Feature conversion

• conv_to_ms_arg(size_change): Feature conversion

• conv_to_ms_arg(seg_sites_feat): Feature conversion

• conv_to_ms_arg(trees_feat): Feature conversion

• conv_to_ms_arg(files_feat): Feature conversion

• conv_to_ms_arg(unphased): Feature conversion

• conv_to_ms_arg(default): Feature conversion

Functions

• conv_to_msms_arg(growth): Feature conversion

• conv_to_scrm_arg(growth): Feature conversion

• conv_to_seqgen_arg(growth): Feature conversion

• conv_to_msms_arg(ign_singletons): Feature conversion

• conv_to_scrm_arg(ign_singletons): Feature conversion

• conv_to_seqgen_arg(ign_singletons): Feature conversion

• conv_to_msms_arg(migration): Feature conversion

• conv_to_scrm_arg(migration): Feature conversion

• conv_to_seqgen_arg(migration): Feature conversion

• conv_to_msms_arg(mutation): Feature conversion

• conv_to_scrm_arg(mutation): Feature conversion

• conv_to_seqgen_arg(mutation): Feature conversion

• conv_to_msms_arg(outgroup): Feature conversion

• conv_to_scrm_arg(outgroup): Feature conversion

• conv_to_seqgen_arg(outgroup): Feature conversion

• conv_to_msms_arg(pop_merge): Feature conversion

• conv_to_scrm_arg(pop_merge): Feature conversion

• conv_to_seqgen_arg(pop_merge): Feature conversion

• conv_to_msms_arg(recombination): Feature conversion

• conv_to_scrm_arg(recombination): Feature conversion

• conv_to_seqgen_arg(recombination): Feature conversion

• conv_to_msms_arg(sample): Feature conversion

• conv_to_scrm_arg(sample): Feature conversion

• conv_to_seqgen_arg(sample): Feature conversion

• conv_to_scrm_arg(selection): Feature conversion

• conv_to_msms_arg(selection): Feature conversion

• conv_to_seqgen_arg(selection): Feature conversion

• conv_to_msms_arg(size_change): Feature conversion

• conv_to_scrm_arg(size_change): Feature conversion

• conv_to_seqgen_arg(size_change): Feature conversion

• conv_to_msms_arg(seg_sites_feat): Feature conversion

• conv_to_scrm_arg(seg_sites_feat): Feature conversion

• conv_to_seqgen_arg(seg_sites_feat): Feature conversion

• conv_to_msms_arg(trees_feat): Feature conversion

• conv_to_scrm_arg(trees_feat): Feature conversion

• conv_to_seqgen_arg(trees_feat): Feature conversion

• conv_to_msms_arg(files_feat): Feature conversion

• conv_to_scrm_arg(files_feat): Feature conversion

• conv_to_seqgen_arg(files_feat): Feature conversion

• conv_to_msms_arg(unphased): Feature conversion

• conv_to_scrm_arg(unphased): Feature conversion

• conv_to_seqgen_arg(unphased): Feature conversion

• conv_to_msms_arg(default): Feature conversion

• conv_to_scrm_arg(default): Feature conversion

• conv_to_seqgen_arg(default): Feature conversion

coala documentation built on Jan. 5, 2023, 5:11 p.m.