Nothing
# For principle innovations of this code see flag.R and flag.cpp
# Helper functions
checkld <- function(...) {
if(any(names(list(...)) == "logdiff")) {
warning("argument 'logdiff' was renamed to 'log'")
TRUE
} else FALSE
}
baselog <- base::log
fdiff <- function(x, n = 1, diff = 1, ...) UseMethod("fdiff") # , x
fdiff.default <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, log = FALSE, rho = 1, stubs = TRUE, ...) {
# if(is.matrix(x) && !inherits(x, "matrix")) return(UseMethod("fdiff", unclass(x)))
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
if(log) x <- baselog(x)
if(is.null(g)) return(.Call(Cpp_fdiffgrowth,x,n,diff,fill,0L,0L,NULL,G_t(t),1L+log,rho,stubs,1))
g <- G_guo(g)
.Call(Cpp_fdiffgrowth,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),1L+log,rho,stubs,1)
}
fdiff.pseries <- function(x, n = 1, diff = 1, fill = NA, log = FALSE, rho = 1, stubs = length(n) + length(diff) > 2L, shift = "time", ...) {
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
index <- uncl2pix(x)
if(log) x <- baselog(x)
g <- index[[1L]]
t <- switch(shift, time = index[[2L]], row = NULL, stop("'shift' must be either 'time' or 'row'"))
if(length(t) && !inherits(x, "indexed_series")) t <- plm_check_time(t)
res <- if(is.matrix(x))
.Call(Cpp_fdiffgrowthm,x,n,diff,fill,fnlevels(g),g,NULL,t,1L+log,rho,stubs,1) else
.Call(Cpp_fdiffgrowth,x,n,diff,fill,fnlevels(g),g,NULL,t,1L+log,rho,stubs,1)
if(is.double(x)) return(res)
pseries_to_numeric(res)
}
fdiff.matrix <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, log = FALSE, rho = 1, stubs = length(n) + length(diff) > 2L, ...) {
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
if(log) x <- baselog(x)
if(is.null(g)) return(.Call(Cpp_fdiffgrowthm,x,n,diff,fill,0L,0L,NULL,G_t(t),1L+log,rho,stubs,1))
g <- G_guo(g)
.Call(Cpp_fdiffgrowthm,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),1L+log,rho,stubs,1)
}
fdiff.zoo <- function(x, ...) if(is.matrix(x)) fdiff.matrix(x, ...) else fdiff.default(x, ...)
fdiff.units <- fdiff.zoo
fdiff.grouped_df <- function(x, n = 1, diff = 1, t = NULL, fill = NA, log = FALSE, rho = 1, stubs = length(n) + length(diff) > 2L, keep.ids = TRUE, ...) {
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
g <- GRP.grouped_df(x, call = FALSE)
tsym <- substitute(t)
nam <- attr(x, "names")
gn <- which(nam %in% g[[5L]])
if(!is.null(tsym)) {
t <- eval(tsym, x, parent.frame())
if(!anyNA(tn <- match(all.vars(tsym), nam))) {
gn <- c(gn, tn)
if(anyDuplicated.default(gn)) stop("timevar coincides with grouping variables!")
}
}
cld <- function(x) if(log) fdapply(x, baselog) else x
if(length(gn)) {
ax <- attributes(x)
res <- .Call(Cpp_fdiffgrowthl,cld(.subset(x, -gn)),n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),1L+log,rho,stubs,1)
if(keep.ids) res <- c(.subset(x, gn), res)
ax[["names"]] <- names(res) # Works for multiple lags / differences !
return(setAttributes(res, ax))
}
.Call(Cpp_fdiffgrowthl,cld(x),n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),1L+log,rho,stubs,1)
}
fdiff.data.frame <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, log = FALSE, rho = 1, stubs = length(n) + length(diff) > 2L, ...) {
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
if(log) x <- fdapply(x, baselog)
if(is.null(g)) return(.Call(Cpp_fdiffgrowthl,x,n,diff,fill,0L,0L,NULL,G_t(t),1L+log,rho,stubs,1))
g <- G_guo(g)
.Call(Cpp_fdiffgrowthl,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),1L+log,rho,stubs,1)
}
fdiff.list <- function(x, ...) fdiff.data.frame(x, ...)
fdiff.pdata.frame <- function(x, n = 1, diff = 1, fill = NA, log = FALSE, rho = 1, stubs = length(n) + length(diff) > 2L, shift = "time", ...) {
if(!missing(...)) if(checkld(...)) log <- list(...)[["logdiff"]] else unused_arg_action(match.call(), ...)
index <- uncl2pix(x)
if(log) x <- fdapply(x, baselog)
g <- index[[1L]]
t <- switch(shift, time = index[[2L]], row = NULL, stop("'shift' must be either 'time' or 'row'"))
if(length(t) && !inherits(x, "indexed_frame")) t <- plm_check_time(t)
.Call(Cpp_fdiffgrowthl,x,n,diff,fill,fnlevels(g),g,NULL,t,1L+log,rho,stubs,1)
}
fgrowth <- function(x, n = 1, diff = 1, ...) UseMethod("fgrowth") # , x
fgrowth.default <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = TRUE, ...) {
# if(is.matrix(x) && !inherits(x, "matrix")) return(UseMethod("fgrowth", unclass(x)))
if(!missing(...)) unused_arg_action(match.call(), ...)
if(logdiff) x <- if(scale == 1) baselog(x) else baselog(x) %*=% scale
if(is.null(g)) return(.Call(Cpp_fdiffgrowth,x,n,diff,fill,0L,0L,NULL,G_t(t),4L-logdiff,scale,stubs,power))
g <- G_guo(g)
.Call(Cpp_fdiffgrowth,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),4L-logdiff,scale,stubs,power)
}
fgrowth.pseries <- function(x, n = 1, diff = 1, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = length(n) + length(diff) > 2L, shift = "time", ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
index <- uncl2pix(x)
if(logdiff) x <- if(scale == 1) baselog(x) else baselog(x) %*=% scale
g <- index[[1L]]
t <- switch(shift, time = index[[2L]], row = NULL, stop("'shift' must be either 'time' or 'row'"))
if(length(t) && !inherits(x, "indexed_series")) t <- plm_check_time(t)
res <- if(is.matrix(x))
.Call(Cpp_fdiffgrowthm,x,n,diff,fill,fnlevels(g),g,NULL,t,4L-logdiff,scale,stubs,power) else
.Call(Cpp_fdiffgrowth,x,n,diff,fill,fnlevels(g),g,NULL,t,4L-logdiff,scale,stubs,power)
if(is.double(x)) return(res)
pseries_to_numeric(res)
}
fgrowth.matrix <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = length(n) + length(diff) > 2L, ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
if(logdiff) x <- if(scale == 1) baselog(x) else baselog(x) %*=% scale
if(is.null(g)) return(.Call(Cpp_fdiffgrowthm,x,n,diff,fill,0L,0L,NULL,G_t(t),4L-logdiff,scale,stubs,power))
g <- G_guo(g)
.Call(Cpp_fdiffgrowthm,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),4L-logdiff,scale,stubs,power)
}
fgrowth.zoo <- function(x, ...) if(is.matrix(x)) fgrowth.matrix(x, ...) else fgrowth.default(x, ...)
fgrowth.units <- fgrowth.zoo
fgrowth.grouped_df <- function(x, n = 1, diff = 1, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = length(n) + length(diff) > 2L, keep.ids = TRUE, ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
g <- GRP.grouped_df(x, call = FALSE)
tsym <- substitute(t)
nam <- attr(x, "names")
gn <- which(nam %in% g[[5L]])
if(!is.null(tsym)) {
t <- eval(tsym, x, parent.frame())
if(!anyNA(tn <- match(all.vars(tsym), nam))) {
gn <- c(gn, tn)
if(anyDuplicated.default(gn)) stop("timevar coincides with grouping variables!")
}
}
cld <- function(x) if(!logdiff) x else if(scale == 1) fdapply(x, baselog) else fdapply(x, baselog) %*=% scale
if(length(gn)) {
ax <- attributes(x)
res <- .Call(Cpp_fdiffgrowthl,cld(.subset(x, -gn)),n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),4L-logdiff,scale,stubs,power)
if(keep.ids) res <- c(.subset(x, gn), res)
ax[["names"]] <- names(res) # Works for multiple lags / differences !
return(setAttributes(res, ax))
}
.Call(Cpp_fdiffgrowthl,cld(x),n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),4L-logdiff,scale,stubs,power)
}
fgrowth.data.frame <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = length(n) + length(diff) > 2L, ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
if(logdiff) x <- if(scale == 1) fdapply(x, baselog) else fdapply(x, baselog) %*=% scale
if(is.null(g)) return(.Call(Cpp_fdiffgrowthl,x,n,diff,fill,0L,0L,NULL,G_t(t),4L-logdiff,scale,stubs,power))
g <- G_guo(g)
.Call(Cpp_fdiffgrowthl,x,n,diff,fill,g[[1L]],g[[2L]],g[[3L]],G_t(t),4L-logdiff,scale,stubs,power)
}
fgrowth.list <- function(x, ...) fgrowth.data.frame(x, ...)
fgrowth.pdata.frame <- function(x, n = 1, diff = 1, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = length(n) + length(diff) > 2L, shift = "time", ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
index <- uncl2pix(x)
if(logdiff) x <- if(scale == 1) fdapply(x, baselog) else fdapply(x, baselog) %*=% scale
g <- index[[1L]]
t <- switch(shift, time = index[[2L]], row = NULL, stop("'shift' must be either 'time' or 'row'"))
if(length(t) && !inherits(x, "indexed_frame")) t <- plm_check_time(t)
.Call(Cpp_fdiffgrowthl,x,n,diff,fill,fnlevels(g),g,NULL,t,4L-logdiff,scale,stubs,power)
}
# Operator data frame methods templates
DG_data_frame_template <- function(x, n = 1, diff = 1, by = NULL, t = NULL, cols = is.numeric,
fill = NA, return = 1L, rho = 1, stubs = .op[["stub"]], keep.ids = TRUE, power = 1, ...) { # , message = 2L, power = 1
if(!missing(...)) unused_arg_action(match.call(), ...)
cld <- function(y) switch(return, y, fdapply(y, baselog), if(rho == 1) fdapply(y, baselog) else fdapply(y, baselog) %*=% rho, y)
if(is.call(by) || is.call(t)) {
ax <- attributes(x)
class(x) <- NULL
nam <- names(x)
if(is.call(by)) {
if(length(by) == 3L) {
cols <- ckmatch(all.vars(by[[2L]]), nam)
gn <- ckmatch(all.vars(by[[3L]]), nam)
} else {
gn <- ckmatch(all.vars(by), nam)
cols <- cols2intrmgn(gn, cols, x)
}
by <- G_guo(if(length(gn) == 1L) x[[gn]] else x[gn])
if(!keep.ids) gn <- NULL
} else {
gn <- NULL
if(length(cols)) cols <- cols2int(cols, x, nam)
by <- if(is.null(by)) list(0L, 0L, NULL) else G_guo(by)
}
if(is.call(t)) {
tn <- ckmatch(all.vars(t), nam)
t1 <- length(tn) == 1L
t <- eval(if(t1) t[[2L]] else attr(terms.formula(t), "variables"), x, attr(t, ".Environment")) # if(t1) x[[tn]] else x[tn]
cols <- if(is.null(cols)) seq_along(x)[-tn] else if(t1) cols[cols != tn] else fsetdiff(cols, tn)
if(keep.ids) gn <- c(gn, tn)
}
res <- if(length(gn))
c(x[gn], .Call(Cpp_fdiffgrowthl,cld(x[cols]),n,diff,fill,by[[1L]],by[[2L]],by[[3L]],G_t(t),return,rho,stubs,power)) else
.Call(Cpp_fdiffgrowthl,cld(x[cols]),n,diff,fill,by[[1L]],by[[2L]],by[[3L]],G_t(t),return,rho,stubs,power)
ax[["names"]] <- names(res)
return(setAttributes(res, ax))
} else if(length(cols)) { # Needs to be done like this, otherwise list-subsetting drops attributes !
ax <- attributes(x)
class(x) <- NULL
x <- x[cols2int(cols, x, names(x), FALSE)]
ax[["names"]] <- names(x)
setattributes(x, ax)
}
if(is.null(by)) return(.Call(Cpp_fdiffgrowthl,cld(x),n,diff,fill,0L,0L,NULL,G_t(t),return,rho,stubs,power))
by <- G_guo(by)
.Call(Cpp_fdiffgrowthl,cld(x),n,diff,fill,by[[1L]],by[[2L]],by[[3L]],G_t(t),return,rho,stubs,power)
}
DG_pdata_frame_template <- function(x, n = 1, diff = 1, cols = is.numeric, fill = NA, return = 1L, rho = 1, stubs = .op[["stub"]], shift = "time",
keep.ids = TRUE, power = 1, ...) {
if(!missing(...)) unused_arg_action(match.call(), ...)
ax <- attributes(x)
nam <- ax[["names"]]
index <- uncl2pix(x)
cols_fun <- is.function(cols)
if(cols_fun && identical(cols, is.numeric)) cols <- which(.Call(C_vtypes, x, 1L))
else if(length(cols)) cols <- cols2int(cols, x, nam, FALSE)
if(cols_fun || keep.ids) {
gn <- which(nam %in% attr(index, "nam")) # Needed for 1 or 3+ index variables
if(length(gn)) {
if(cols_fun) cols <- fsetdiff(cols, gn)
else if(is.null(cols)) cols <- seq_along(unclass(x))[-gn]
}
if(!keep.ids) gn <- NULL
} else gn <- NULL
g <- index[[1L]]
t <- switch(shift, time = index[[2L]], row = NULL, stop("'shift' must be either 'time' or 'row'"))
if(length(t) && !any(ax$class == "indexed_frame")) t <- plm_check_time(t)
cld <- function(y) switch(return, y, fdapply(y, baselog), if(rho == 1) fdapply(y, baselog) else fdapply(y, baselog) %*=% rho, y)
if(length(gn) && length(cols)) {
class(x) <- NULL # Works for multiple lags !
res <- c(x[gn], .Call(Cpp_fdiffgrowthl,cld(x[cols]),n,diff,fill,fnlevels(g),g,NULL,t,return,rho,stubs,power))
ax[["names"]] <- names(res)
return(setAttributes(res, ax))
} else if(!length(gn)) # could speed up ?
return(.Call(Cpp_fdiffgrowthl,cld(fcolsubset(x, cols)),n,diff,fill,fnlevels(g),g,NULL,t,return,rho,stubs,power))
.Call(Cpp_fdiffgrowthl,cld(x),n,diff,fill,fnlevels(g),g,NULL,t,return,rho,stubs,power)
}
# Difference Operator (masks stats::D) # use xt instead of by ?
# setGeneric("D")
D <- function(x, n = 1, diff = 1, ...) UseMethod("D") # , x
D.expression <- function(x, ...) if(missing(x)) stats::D(...) else stats::D(x, ...)
D.call <- function(x, ...) if(missing(x)) stats::D(...) else stats::D(x, ...)
D.name <- function(x, ...) if(missing(x)) stats::D(...) else stats::D(x, ...)
D.default <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], ...) {
# if(is.matrix(x) && !inherits(x, "matrix")) return(fdiff.matrix(x, n, diff, g, t, fill, FALSE, rho, stubs, ...))
fdiff.default(x, n, diff, g, t, fill, FALSE, rho, stubs, ...)
}
D.pseries <- function(x, n = 1, diff = 1, fill = NA, rho = 1, stubs = .op[["stub"]], shift = "time", ...)
fdiff.pseries(x, n, diff, fill, FALSE, rho, stubs, shift, ...)
# setOldClass("pseries")
# setMethod("D", signature(expr = "pseries"), D.pseries)
D.matrix <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], ...)
fdiff.matrix(x, n, diff, g, t, fill, FALSE, rho, stubs, ...)
# setMethod("D", "matrix")
D.zoo <- function(x, ...) if(is.matrix(x)) D.matrix(x, ...) else D.default(x, ...)
D.units <- D.zoo
D.grouped_df <- function(x, n = 1, diff = 1, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...) {
x <- x # because of piped calls -> "." is not in global environment ...
eval(substitute(fdiff.grouped_df(x, n, diff, t, fill, FALSE, rho, stubs, keep.ids, ...)))
}
D.data.frame <- function(x, n = 1, diff = 1, by = NULL, t = NULL, cols = is.numeric,
fill = NA, rho = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...)
DG_data_frame_template(x, n, diff, by, t, cols, fill, 1L, rho, stubs, keep.ids, ...)
D.list <- function(x, ...) D.data.frame(x, ...)
D.pdata.frame <- function(x, n = 1, diff = 1, cols = is.numeric, fill = NA, rho = 1, stubs = .op[["stub"]], shift = "time",
keep.ids = TRUE, ...)
DG_pdata_frame_template(x, n, diff, cols, fill, 1L, rho, stubs, shift, keep.ids, ...)
# Log-Difference Operator
Dlog <- function(x, n = 1, diff = 1, ...) UseMethod("Dlog") # , x
Dlog.default <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], ...) {
# if(is.matrix(x) && !inherits(x, "matrix")) return(fdiff.matrix(x, n, diff, g, t, fill, TRUE, rho, stubs, ...))
fdiff.default(x, n, diff, g, t, fill, TRUE, rho, stubs, ...)
}
Dlog.pseries <- function(x, n = 1, diff = 1, fill = NA, rho = 1, stubs = .op[["stub"]], shift = "time", ...)
fdiff.pseries(x, n, diff, fill, TRUE, rho, stubs, shift, ...)
Dlog.matrix <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], ...)
fdiff.matrix(x, n, diff, g, t, fill, TRUE, rho, stubs, ...)
Dlog.zoo <- function(x, ...) if(is.matrix(x)) Dlog.matrix(x, ...) else Dlog.default(x, ...)
Dlog.units <- Dlog.zoo
Dlog.grouped_df <- function(x, n = 1, diff = 1, t = NULL, fill = NA, rho = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...) {
x <- x
eval(substitute(fdiff.grouped_df(x, n, diff, t, fill, TRUE, rho, stubs, keep.ids, ...)))
}
Dlog.data.frame <- function(x, n = 1, diff = 1, by = NULL, t = NULL, cols = is.numeric,
fill = NA, rho = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...)
DG_data_frame_template(x, n, diff, by, t, cols, fill, 2L, rho, stubs, keep.ids, ...)
Dlog.list <- function(x, ...) Dlog.data.frame(x, ...)
Dlog.pdata.frame <- function(x, n = 1, diff = 1, cols = is.numeric, fill = NA, rho = 1, stubs = .op[["stub"]], shift = "time",
keep.ids = TRUE, ...)
DG_pdata_frame_template(x, n, diff, cols, fill, 2L, rho, stubs, shift, keep.ids, ...)
# Growth Operator
G <- function(x, n = 1, diff = 1, ...) UseMethod("G") # , x
G.default <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], ...) {
# if(is.matrix(x) && !inherits(x, "matrix")) return(fgrowth.matrix(x, n, diff, g, t, fill, logdiff, scale, power, stubs, ...))
fgrowth.default(x, n, diff, g, t, fill, logdiff, scale, power, stubs, ...)
}
G.pseries <- function(x, n = 1, diff = 1, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], shift = "time", ...)
fgrowth.pseries(x, n, diff, fill, logdiff, scale, power, stubs, shift, ...)
G.matrix <- function(x, n = 1, diff = 1, g = NULL, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], ...)
fgrowth.matrix(x, n, diff, g, t, fill, logdiff, scale, power, stubs, ...)
G.zoo <- function(x, ...) if(is.matrix(x)) G.matrix(x, ...) else G.default(x, ...)
G.units <- G.zoo
G.grouped_df <- function(x, n = 1, diff = 1, t = NULL, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...) {
x <- x
eval(substitute(fgrowth.grouped_df(x, n, diff, t, fill, logdiff, scale, power, stubs, keep.ids, ...)))
}
G.data.frame <- function(x, n = 1, diff = 1, by = NULL, t = NULL, cols = is.numeric,
fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], keep.ids = TRUE, ...)
DG_data_frame_template(x, n, diff, by, t, cols, fill, 4L-logdiff, scale, stubs, keep.ids, power, ...)
G.list <- function(x, ...) G.data.frame(x, ...)
G.pdata.frame <- function(x, n = 1, diff = 1, cols = is.numeric, fill = NA, logdiff = FALSE, scale = 100, power = 1, stubs = .op[["stub"]], shift = "time", keep.ids = TRUE, ...)
DG_pdata_frame_template(x, n, diff, cols, fill, 4L-logdiff, scale, stubs, shift, keep.ids, power, ...)
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