API for colocboost
Multi-Context Colocalization Analysis for QTL and GWAS Studies
| Global functions | |
|---|---|
| Ambiguous_Colocalization | Man page |
| Heterogeneous_Effect | Man page |
| Ind_5traits | Man page |
| Non_Causal_Strongest_Marginal | Man page |
| Sumstat_5traits | Man page |
| Weaker_GWAS_Effect | Man page |
| boost_KL_delta | Source code |
| boost_check_stop | Source code |
| boost_check_update_jk_focal | Source code |
| boost_check_update_jk_nofocal | Source code |
| boost_check_update_jk_one_causal | Source code |
| boost_obj_last | Source code |
| cb_model_para_update | Source code |
| cb_model_update | Source code |
| check_jk_jkeach | Source code |
| check_null_post | Source code |
| check_pair_jkeach | Source code |
| check_pair_overlap | Source code |
| check_two_overlap_sets | Source code |
| colocboost | Man page Source code |
| colocboost_assemble | Source code |
| colocboost_assemble_cos | Source code |
| colocboost_assemble_ucos | Source code |
| colocboost_check_update_jk | Source code |
| colocboost_diagLD | Source code |
| colocboost_init_data | Source code |
| colocboost_init_model | Source code |
| colocboost_init_para | Source code |
| colocboost_inits | Source code |
| colocboost_one_causal | Source code |
| colocboost_one_iteration | Source code |
| colocboost_output_reorganization | Source code |
| colocboost_plot | Man page Source code |
| colocboost_post_inference | Source code |
| colocboost_update | Source code |
| colocboost_workhorse | Source code |
| estimate_change_profile | Source code |
| estimate_change_profile_res | Source code |
| estimate_profile_loglike | Source code |
| get_LD_jk | Source code |
| get_LD_jk1_jk2 | Source code |
| get_ambiguous_colocalization | Man page Source code |
| get_avWeigth | Source code |
| get_beta | Source code |
| get_between_purity | Source code |
| get_colocboost_summary | Man page Source code |
| get_cormat | Man page Source code |
| get_correlation | Source code |
| get_cos | Man page Source code |
| get_cos_details | Source code |
| get_cos_evidence | Source code |
| get_cos_purity | Man page Source code |
| get_cos_summary | Man page Source code |
| get_data_info | Source code |
| get_full_output | Source code |
| get_hierarchical_clusters | Man page Source code |
| get_in_cos | Source code |
| get_input_plot | Source code |
| get_integrated_weight | Source code |
| get_lfdr | Source code |
| get_lfsr | Source code |
| get_max_profile | Source code |
| get_merge_ordered_with_indices | Source code |
| get_model_info | Source code |
| get_modularity | Source code |
| get_multiple_testing_correction | Source code |
| get_n_cluster | Source code |
| get_padj | Source code |
| get_pip | Source code |
| get_purity | Source code |
| get_robust_colocalization | Man page Source code |
| get_ucos_summary | Man page Source code |
| get_vcp | Source code |
| get_z | Source code |
| inital_residual | Source code |
| lfdr | Source code |
| merge_cos_ucos | Source code |
| merge_sets | Source code |
| merge_ucos | Source code |
| pi0est | Source code |
| plot_initial | Source code |
| process_individual_data | Source code |
| process_sumstat | Source code |
| qvalue | Source code |
| w_cs | Source code |
| w_purity | Source code |
