Weaker_GWAS_Effect: Individual level data for 2 traits and 2 causal variants with...
In colocboost: Multi-Context Colocalization Analysis for QTL and GWAS Studies
Weaker_GWAS_Effect R Documentation
Individual level data for 2 traits and 2 causal variants with weaker effects for focal trait
Description
An example dataset with simulated genotypes and traits for 2 traits and 2 common causal variants with heterogeneous effects
Usage
Weaker_GWAS_Effect
Format
Weaker_GWAS_Effect
A list with 3 elements
- X
List of genotype matrices
- Y
List of traits
- variant
indices of two causal variants
Source
The Weaker_GWAS_Effect dataset contains 2 simulated phenotypes alongside corresponding genotype matrices.
There are two causal variants, one of which has a weaker effect on the focal trait compared to the other trait.
Due to the file size limitation of CRAN release, this is a subset of simulated data to generate Figure 2b in Cao etc. 2025.
See full dataset in colocboost paper repo https://github.com/StatFunGen/colocboost-paper.
See Also
Other colocboost_data:
Ambiguous_Colocalization,
Heterogeneous_Effect,
Ind_5traits,
Non_Causal_Strongest_Marginal,
Sumstat_5traits
colocboost documentation built on June 8, 2025, 11:07 a.m.
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| Weaker_GWAS_Effect | R Documentation |
Individual level data for 2 traits and 2 causal variants with weaker effects for focal trait
Description
An example dataset with simulated genotypes and traits for 2 traits and 2 common causal variants with heterogeneous effects
Usage
Weaker_GWAS_Effect
Format
Weaker_GWAS_Effect
A list with 3 elements
- X
List of genotype matrices
- Y
List of traits
- variant
indices of two causal variants
Source
The Weaker_GWAS_Effect dataset contains 2 simulated phenotypes alongside corresponding genotype matrices. There are two causal variants, one of which has a weaker effect on the focal trait compared to the other trait. Due to the file size limitation of CRAN release, this is a subset of simulated data to generate Figure 2b in Cao etc. 2025. See full dataset in colocboost paper repo https://github.com/StatFunGen/colocboost-paper.
See Also
Other colocboost_data:
Ambiguous_Colocalization,
Heterogeneous_Effect,
Ind_5traits,
Non_Causal_Strongest_Marginal,
Sumstat_5traits
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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