Man pages for colocboost
Multi-Context Colocalization Analysis for QTL and GWAS Studies
| Ambiguous_Colocalization | A real data example includes an ambiguous colocalization... |
| colocboost | ColocBoost: A gradient boosting informed multi-omics xQTL... |
| colocboost_plot | Plot visualization plot from a ColocBoost output. |
| get_ambiguous_colocalization | Get ambiguous colocalization events from trait-specific... |
| get_colocboost_summary | Get summary tables from a ColocBoost output. |
| get_cormat | A fast function to calculate correlation matrix (LD matrix)... |
| get_cos | Extract CoS at different coverage |
| get_cos_purity | Calculate purity within and in-between CoS |
| get_cos_summary | Get colocalization summary table from a ColocBoost output. |
| get_hierarchical_clusters | Perform modularity-based hierarchical clustering for a... |
| get_robust_colocalization | Recalibrate and summarize robust colocalization events. |
| get_ucos_summary | Get trait-specific summary table from a ColocBoost output. |
| Heterogeneous_Effect | Individual level data for 2 traits and 2 causal variants with... |
| Ind_5traits | Individual level data for 5 traits |
| Non_Causal_Strongest_Marginal | Individual level data for 2 traits and 2 causal variants, but... |
| Sumstat_5traits | Summary level data for 5 traits |
| Weaker_GWAS_Effect | Individual level data for 2 traits and 2 causal variants with... |
