API for ctDNAtools
Analyze Circulating Tumor DNA Sequencing Data
| Global functions | |
|---|---|
| analyze_fragmentation | Man page Source code |
| bin_fragment_size | Man page Source code |
| compare_simulated_observed | Man page Source code |
| create_background_panel | Man page Source code |
| create_background_panel_instance | Man page Source code |
| create_black_list | Man page Source code |
| extract_trinucleotide_context | Man page Source code |
| filter_mutations | Man page Source code |
| get_background_rate | Man page Source code |
| get_bam_SM | Man page Source code |
| get_bam_chr | Man page Source code |
| get_fragment_size | Man page Source code |
| get_hist_bins | Man page Source code |
| get_mutation_read_names | Man page Source code |
| get_mutations_fragment_size | Man page Source code |
| get_mutations_read_counts | Man page Source code |
| get_mutations_read_names | Man page Source code |
| get_read_counts | Man page Source code |
| merge_mutations_in_phase | Man page Source code |
| mutations | Man page |
| positivity_test | Man page Source code |
| simulator | Man page Source code |
| summarize_fragment_size | Man page Source code |
| targets | Man page |
| test_ctDNA | Man page Source code |
| vcf_to_mutations_df | Man page Source code |
| verify_tag | Man page Source code |
