| ath.churchill | Example metabolite expression data from Arabidopsis Thaliana... |
| ath.metabolites | Example metabolite expression data from Arabidopsis Thaliana... |
| ath.result | Output of QCLscan after 5000 permutations on the metabolite... |
| basic.qc | Create quality control plots. |
| ctl.circle | Circleplot CTL on multiple traits |
| ctl.helper | CTLhelper - Helper functions for CTL mapping |
| ctl.hist | Plot histogram of CTL permutations |
| ctl.image | Plot genome-wide CTL on multiple traits |
| ctl-internal | Internal CTL functions |
| ctl.lineplot | Lineplot CTL on multiple traits |
| ctl.load | ctl.load - Load CTLs calculated by the D2.0 version |
| ctl.mapping | CTLmapping - Scan for correlated trait loci (CTL) |
| ctl.network | CTLnetwork - Interaction network from a genome-wide CTLscan... |
| ctl-package | CTL - CTL mapping in experimental crosses |
| ctl.permute.plot | Differential correlation versus likelihood plotted in curves |
| ctl.plot.ctlobject | Plot CTL curves or heatmaps |
| ctl.plot.ctlscan | Plot CTL results as bar, line or GWAS plot. |
| ctl.print.ctlobject | Print the results of a CTL genome scan |
| ctl.print.ctlscan | Print the results of a single phenotype CTL scan |
| ctl.profiles | CTLprofiles - Extract CTL interaction profiles |
| ctl.regions | CTLregions - Get all significant interactions from a... |
| ctl.scan | CTLscan - Scan for Correlated Trait Locus (CTL) |
| ctl.scan.cross | CTLscan.cross - Scan for Correlated Trait Locus (CTL) (R/qtl... |
| ctl.significant | CTLsignificant - Get all significant interactions from a... |
| detect.peaks | detect.peaks - Peak detection algorithm to 'flatten' data... |
| plotTraits | plotTraits - Trait vs Trait scatterplot, colored by the... |
| qtl.image | Plot a QTL heatmap of the phenotypes scanned by CTLscan |
| qtl.mapping | QTLmapping - QTL mapping method for CTL analysis |
| scanSD | scanSD - Analyze the differences in Standard Deviation... |
| scanSD.cross | scanSD.cross - Analyze the differences in standard deviation... |
| scanSlopes | scanSlopes - Create a slope difference profile between two... |
| scanSlopes.cross | scanSlopes.cross - Create a slope difference profile between... |
| yeast.brem | Example gene expression data from Saccharomyces cerevisiae on... |
