ctl.load: ctl.load - Load CTLs calculated by the D2.0 version

In ctl: Correlated Trait Locus Mapping

ctl.load - Load CTLs calculated by the D2.0 version

Description

Load CTLs calculated by the D2.0 version

Usage

ctl.load(genotypes = "ngenotypes.txt", phenotypes = "nphenotypes.txt",
output = "ctlout", from=1, to, verbose = FALSE)

Arguments

genotypes	Original datafile containing the genotypes scanned.
phenotypes	Original datafile containing the phenotypes scanned.
output	Directory containing the output files.
from	Start loading at which phenotype.
to	Continue loading untill this phenotype.
verbose	Be verbose.

Details

TODO

Value

CTLobject, a list with at each index a CTLscan object:

• $ctls - Matrix of differential correlation scores for each trait at each marker

• $qtl - Vector of QTL lodscores for each marker (if a QTL scan was perfomed -qtl)

• $p - Vector of maximum scores per marker obtained during permutations

• $l - Matrix of LOD scores for CTL likelihood

Note

TODO

Author(s)

Danny Arends [e-mail]
Maintainer: Danny Arends [e-mail]

References

TODO

Examples

  library(ctl)         # Load CTL library

ctl documentation built on Nov. 27, 2023, 5:09 p.m.