ctl.significant: CTLsignificant - Get all significant interactions from a...
In ctl: Correlated Trait Locus Mapping

CTLsignificant

R Documentation

CTLsignificant - Get all significant interactions from a genome-wide CTLscan

Description

Get all significant interactions from a genome-wide CTLscan.

Usage

CTLsignificant(CTLobject, significance = 0.05, what = c("names","ids"))

Arguments

`CTLobject`	An object of class `"CTLobject"`, as output by `CTLscan`.
`significance`	Significance threshold to set a genome wide False Discovery Rate (FDR).
`what`	Return trait and marker names or column numbers (for indexing).

Details

TODO

Value

A matrix significant CTL interactions with 4 columns: trait, marker, trait, lod

Note

TODO

Author(s)

Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com

References

TODO

Examples

  library(ctl)
  data(ath.result)
  all_interactions <- CTLsignificant(ath.result)
  all_interactions[1:10, ]
  trait1_interactions <- CTLsignificant(ath.result[[1]])
  trait1_interactions

ctl documentation built on Nov. 27, 2023, 5:09 p.m.