scanSD | R Documentation |
Analyze the differences in Standard Deviation between genotypes between two traits
scanSD(genotypes, phenotypes, phenocol=c(1,2), doRank = FALSE)
genotypes |
Matrix of genotypes. (individuals x markers) |
phenotypes |
Matrix of phenotypes. (individuals x phenotypes) |
phenocol |
Which phenotype column(s) should be plotted against each other, Default: phenotype 1 versus 2 |
doRank |
Transform quantitative data into ranked data before analyzing the slope. |
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Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com
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CTLscan
- Main function to scan for CTL
CTLsignificant
- Significant interactions from a CTLscan
CTLnetwork
- Create a CTL network from a CTLscan
image.CTLobject
- Heatmap overview of a CTLscan
plot.CTLscan
- Plot the CTL curve for a single trait
library(ctl)
data(multitrait) # Arabidopsis Thaliana (R/qtl cross object)
sds <- scanSD(pull.geno(multitrait),pull.pheno(multitrait))
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