ath.churchill: Example metabolite expression data from Arabidopsis Thaliana...

In ctl: Correlated Trait Locus Mapping

Example metabolite expression data from Arabidopsis Thaliana on 9 metabolites.

Description

Arabidopsis recombinant inbred lines by selfing. There are 403 lines, 9 phenotypes, and 69 markers on 5 chromosomes stored as a list with 3 matrices: genotypes, phenotypes, map

Usage

  data(ath.churchill)

Format

Data stored in a list holding 3 matrices genotypes, phenotypes and map

Details

Arabidopsis recombinant inbred lines by selfing. There are 403 lines, 9 metabolic phenotypes, and 69 markers on 5 chromosomes.

Source

Arabidopsis Bay-0 x Sha metabolite data from XX, senior author: Gary Churchill 2012, Published in: Plos

References

TODO

Examples

  library(ctl)
  data(ath.churchill)           # Arabidopsis thaliana dataset
  
  ath.gary$genotypes[1:5, 1:5]  # ath.gary is the short name
  ath.gary$phenotypes[1:5, 1:5]
  ath.gary$map[1:5, ]

ctl documentation built on Nov. 27, 2023, 5:09 p.m.