ath.result: Output of QCLscan after 5000 permutations on the metabolite...

In ctl: Correlated Trait Locus Mapping

Output of QCLscan after 5000 permutations on the metabolite expression data from Arabidopsis Thaliana.

Description

Results from a QCLscan on Arabidopsis recombinant inbred lines by selfing. There are 162 lines, 24 phenotypes, and 117 markers on 5 chromosomes stored as a list with 3 matrices: genotypes, phenotypes, map

Usage

  data(ath.result)

Format

Cross object from R/QTL

Details

Results from a QCLscan on Arabidopsis recombinant inbred lines by selfing. There are 162 lines, 24 phenotypes, and 117 markers on 5 chromosomes. the QCLscan also includes 5000 permutations

Source

Part of the Arabidopsis RIL selfing experiment with Landsberg Erecta (Ler) and Cape Verde Islands (Cvi) with 162 individuals scored (with errors) at 117 markers. Dataset obtained from GBIC - Groningen BioInformatics Centre, University of Groningen.

References

• Keurentjes, J. J. and Fu, J. and de Vos, C. H. and Lommen, A. and Hall, R. D. and Bino, R. J. and van der Plas, L. H. and Jansen, R. C. and Vreugdenhil, D. and Koornneef, M. (2006), The genetics of plant metabolism. Nature Genetics. 38-7, 842–849.

• Alonso-Blanco, C. and Peeters, A. J. and Koornneef, M. and Lister, C. and Dean, C. and van den Bosch, N. and Pot, J. and Kuiper, M. T. (1998), Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J. 14(2), 259–271.

Examples

data(ath.result)           # Arabidopsis thaliana dataset
ath.result[[1]]            # Print the QCLscan summary of the phenotype 1

ctl documentation built on May 29, 2024, 9:03 a.m.