Man pages for ctl
Correlated Trait Locus (CTL) Mapping in R

ath.churchillExample metabolite expression data from Arabidopsis Thaliana...
ath.metabolitesExample metabolite expression data from Arabidopsis Thaliana...
ath.resultOutput of QCLscan after 5000 permutations on the metabolite...
basic.qcCreate quality control plots.
ctl.circleCircleplot CTL on multiple traits
ctl.helperCTLhelper - Helper functions for CTL mapping
ctl.histPlot histogram of CTL permutations
ctl.imagePlot genome-wide CTL on multiple traits
ctl-internalInternal CTL functions
ctl.lineplotLineplot CTL on multiple traits
ctl.loadctl.load - Load CTLs calculated by the D2.0 version
ctl.mappingCTLmapping - Scan for correlated trait loci (CTL)
ctl.networkCTLnetwork - Interaction network from a genome-wide CTLscan...
ctl-packageCTL - CTL mapping in experimental crosses
ctl.permute.plotDifferential correlation versus likelihood plotted in curves
ctl.plot.ctlobjectPlot CTL curves or heatmaps
ctl.plot.ctlscanPlot CTL results as bar, line or GWAS plot.
ctl.print.ctlobjectPrint the results of a CTL genome scan
ctl.print.ctlscanPrint the results of a single phenotype CTL scan
ctl.profilesCTLprofiles - Extract CTL interaction profiles
ctl.regionsCTLregions - Get all significant interactions from a...
ctl.scanCTLscan - Scan for Correlated Trait Locus (CTL)
ctl.scan.crossCTLscan.cross - Scan for Correlated Trait Locus (CTL) (R/qtl...
ctl.significantCTLsignificant - Get all significant interactions from a...
detect.peaksdetect.peaks - Peak detection algorithm to 'flatten' data...
plotTraitsplotTraits - Trait vs Trait scatterplot, colored by the...
qtl.imagePlot a QTL heatmap of the phenotypes scanned by CTLscan
qtl.mappingQTLmapping - QTL mapping method for CTL analysis
scanSDscanSD - Analyze the differences in Standard Deviation...
scanSD.crossscanSD.cross - Analyze the differences in standard deviation...
scanSlopesscanSlopes - Create a slope difference profile between two...
scanSlopes.crossscanSlopes.cross - Create a slope difference profile between...
yeast.bremExample gene expression data from Saccharomyces cerevisiae on...
ctl documentation built on May 2, 2019, 2:40 a.m.