count_codons: Count occurrences of different codons
In cubar: Codon Usage Bias Analysis
count_codons R Documentation
Count occurrences of different codons
Description
count_codons tabulates the occurrences of all the 64 codons in input CDSs
Usage
count_codons(seqs, ...)
Arguments
seqs
CDS sequences, DNAStringSet.
...
additional arguments passed to Biostrings::trinucleotideFrequency.
Value
matrix of codon (column) frequencies of each CDS (row).
Examples
# count codon occurrences
cf_all <- count_codons(yeast_cds)
dim(cf_all)
cf_all[1:5, 1:5]
count_codons(yeast_cds[1])
cubar documentation built on April 3, 2025, 8:58 p.m.
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| count_codons | R Documentation |
Count occurrences of different codons
Description
count_codons tabulates the occurrences of all the 64 codons in input CDSs
Usage
count_codons(seqs, ...)
Arguments
seqs |
CDS sequences, DNAStringSet. |
... |
additional arguments passed to |
Value
matrix of codon (column) frequencies of each CDS (row).
Examples
# count codon occurrences
cf_all <- count_codons(yeast_cds)
dim(cf_all)
cf_all[1:5, 1:5]
count_codons(yeast_cds[1])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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